Browse Element(s) Details


OsAffx.31869.1.S1_at

Description tigr:9640.m02377
TID=OsAffx.31869.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0482011/11retrotransposon protein, putative, unclassified
LOC_Os06g3690011/11retrotransposon protein, putative, unclassified
LOC_Os10g1897010/11retrotransposon protein, putative, unclassified
LOC_Os10g0302010/11retrotransposon protein, putative, unclassified
LOC_Os03g6137010/11retrotransposon protein, putative, unclassified
LOC_Os05g4450010/11retrotransposon protein, putative, unclassified
LOC_Os07g1300010/11retrotransposon protein, putative, unclassified
LOC_Os11g171809/11retrotransposon protein, putative, unclassified
LOC_Os12g183109/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g173409/11retrotransposon protein, putative, unclassified
LOC_Os02g300009/11retrotransposon protein, putative, unclassified
LOC_Os05g257409/11retrotransposon protein, putative, unclassified
LOC_Os11g262709/11retrotransposon protein, putative, unclassified
LOC_Os08g207009/11retrotransposon protein, putative, unclassified
LOC_Os01g380588/11retrotransposon protein, putative, unclassified
LOC_Os08g165108/11retrotransposon protein, putative, unclassified
LOC_Os04g159998/11retrotransposon protein, putative, unclassified
LOC_Os04g166498/11retrotransposon protein, putative, unclassified
LOC_Os09g010108/11retrotransposon protein, putative, unclassified
LOC_Os08g195708/11retrotransposon protein, putative, unclassified
LOC_Os08g195108/11retrotransposon protein, putative, unclassified
LOC_Os02g279308/11retrotransposon protein, putative, unclassified
LOC_Os03g417108/11retrotransposon protein, putative, unclassified
LOC_Os08g117408/11retrotransposon protein, putative, unclassified
LOC_Os01g380498/11retrotransposon protein, putative, unclassified
LOC_Os07g458507/11retrotransposon protein, putative, unclassified
LOC_Os11g263707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g105307/11retrotransposon protein, putative, unclassified
LOC_Os11g279507/11retrotransposon protein, putative, unclassified
LOC_Os08g103707/11retrotransposon protein, putative, unclassified
LOC_Os01g267406/11retrotransposon protein, putative, unclassified
LOC_Os05g179006/11retrotransposon protein, putative, unclassified
LOC_Os04g077306/11retrotransposon protein, putative, unclassified
LOC_Os10g242905/11retrotransposon protein, putative, unclassified
LOC_Os12g249405/11retrotransposon protein, putative, unclassified
LOC_Os04g053404/11retrotransposon protein, putative, unclassified
LOC_Os07g163604/11retrotransposon protein, putative, unclassified
LOC_Os08g118604/11retrotransposon protein, putative, unclassified
LOC_Os07g331704/11retrotransposon protein, putative, unclassified
LOC_Os05g204903/11retrotransposon protein, putative, unclassified
LOC_Os12g115903/11retrotransposon protein, putative, unclassified
LOC_Os09g030603/11retrotransposon protein, putative, unclassified
LOC_Os06g032503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g444903/11retrotransposon protein, putative, unclassified
LOC_Os08g123302/11retrotransposon protein, putative, unclassified
LOC_Os06g149902/11retrotransposon protein, putative, unclassified
LOC_Os01g311502/11retrotransposon protein, putative, unclassified
LOC_Os12g144301/11retrotransposon protein, putative, unclassified
LOC_Os10g048101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04790OsAffx.13672.1.S1_at10/114+2282838..2286662hypothetical protein
LOC_Os04g04800OsAffx.25862.2.S1_at9/114+2287918..2289845Protein kinase domain containing protein
LOC_Os04g04810NANA4+2302334..2303979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04820OsAffx.31869.1.S1_at11/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.3.S1_s_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.5.S1_x_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.2.S1_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.3.S1_s_at10/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.1.S1_x_at9/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.3.S1_x_at7/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.53142.1.S1_at2/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.4.S1_x_at2/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.55127.1.S1_at1/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04840NANA4+2315782..2316326retrotransposon protein, putative, unclassified
LOC_Os04g04850Os.10731.1.A1_a_at11/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.38764.1.S1_x_at8/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.48015.1.A1_x_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850OsAffx.16430.1.S1_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.45173.1.S1_x_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04860NANA4+2328858..2331679retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.1.S1_at--136--28936Chr12:10564826..10564850 (25 bp)
AAGGGAGCAGCAGGTATGTTTCAAC
LOC_Os12g18310
OsAffx.31869.1.S1_at--826--68940Chr12:12663808..12663832 (25 bp)
GTATGTTTCAACTGTTACAAGCCAG
NONE
OsAffx.31869.1.S1_at--640--97136Chr12:10564846..10564870 (25 bp)
TCAACTGTTACAAGCCAGGCCACTT
LOC_Os12g18310
OsAffx.31869.1.S1_at--802--98536Chr12:10564854..10564878 (25 bp)
TACAAGCCAGGCCACTTTGCAAGAG
LOC_Os12g18310
OsAffx.31869.1.S1_at--583--26533Chr12:10564857..10564881 (25 bp)
AAGCCAGGCCACTTTGCAAGAGAGT
LOC_Os12g18310
OsAffx.31869.1.S1_at--774--20338Chr12:10564867..10564891 (25 bp)
ACTTTGCAAGAGAGTGTCCGAAGCC
LOC_Os12g18310
OsAffx.31869.1.S1_at--840--92722Chr12:10564883..10564907 (25 bp)
TCCGAAGCCGAAGCATCAGCAGCCG
LOC_Os12g18310
OsAffx.31869.1.S1_at--930--3916Chr12:10564897..10564921 (25 bp)
ATCAGCAGCCGCAAGGTCAGGTCAA
LOC_Os12g18310
OsAffx.31869.1.S1_at--339--33716Chr12:10564902..10564926 (25 bp)
CAGCCGCAAGGTCAGGTCAACAACA
LOC_Os12g18310
OsAffx.31869.1.S1_at--451--90543Chr12:12663915..12663953 (24 bp)
TGCAGTGCCAGTTGCGTCTTCAAGA
NONE
OsAffx.31869.1.S1_at--104--72941Chr11:14540467..14540491 (25 bp)
GTGCCAGTTGCGTCTTCAAGAGTTG
LOC_Os11g26270
Target Sequence 
AAGGGAGCAGCAGGTATGTTTCAACTGTTACAAGCCAGGCCACTTTGCAAGAGAGTGTCCGAAGCCGAAGCATCAGCAGC
CGCAAGGTCAGGTCAACAACATTGTNGTCACAGGAGCCAATGCAGTGCCAGTTGCGTCTTCAAGAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis