Browse Element(s) Details


OsAffx.32009.2.S1_at

Description tigr:9640.m03281
TID=OsAffx.32009.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=translation initiation factor IF-1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3396011/11translation initiation factor IF-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32009.2.S1_at--193--2332Chr12:20444173..20444197 (25 bp)
AAAGCAATAAGCCTCCCTTGGATAG
LOC_Os12g33960
OsAffx.32009.2.S1_at--295--5392Chr12:20444208..20444232 (25 bp)
GAAGCACTGTGCGTTACCAGGTGTA
LOC_Os12g33960
OsAffx.32009.2.S1_at--153--10872Chr12:20444427..20444451 (25 bp)
TTGGACTACCTCGAATGGCAACATG
LOC_Os12g33960
OsAffx.32009.2.S1_at--524--852Chr12:20444441..20444465 (25 bp)
ATGGCAACATGCTCGCTGATTCCTA
LOC_Os12g33960
OsAffx.32009.2.S1_at--429--1993Chr12:20444468..20444492 (25 bp)
ACTCCTATCTACATAACTGCTCCAG
LOC_Os12g33960
OsAffx.32009.2.S1_at--489--7833Chr12:20444521..20444545 (25 bp)
GGTAATAATACACCCTCGACTACTG
LOC_Os12g33960
OsAffx.32009.2.S1_at--543--5414Chr12:20660238..20660259 (22 bp)
GAACCTATACTTGACCTTGCGTACA
NONE
OsAffx.32009.2.S1_at--834--4454Chr12:20660261..20660516 (25 bp)
GCCTATTATCCTATCGCTTGTCTTA
NONE
OsAffx.32009.2.S1_at--1083--2694Chr12:20660544..20660568 (25 bp)
AAGCTTCAAACAGCACCATTGGCCG
NONE
OsAffx.32009.2.S1_at--87--1735Chr12:20660558..20660582 (25 bp)
ACCATTGGCCGAAGCAGACCTGGAA
NONE
OsAffx.32009.2.S1_at--676--256Chr12:20660616..20660640 (25 bp)
ATATCGCCTTTCATGCTAAAATCGG
NONE
Target Sequence 
AAAGCAATAAGCCTCCCTTGGATAGATCGAAGAAAGAAGCACTGTGCGTTACCAGGTGTAGTGGAGAAAGCAAGGGCAAA
GGAAGGTTGGACTACCTCGAATGGCAACATGCTCGCTGATTCCTACCACTCCTATCTACATAACTGCTCCAGAGAAGGGA
AGGCAGATGTCAGTGAAACGGGTAATAATACACCCTCGACTACTGGCTCGAATTACTTCGGATCTTTCCCGAGAGAAGCA
AAAATTACTTTCGAGGGTTTAGTTATGGAAGCCCTACCCAACGGAATGTTCCGCGTTCGCCTAGAGAATGACACCATCAT
CCTGGGCTATATTTCAGGAAAGATCCGGTCTAGTTCTATACGAATACTGATGGGGGATAGGGTCAAAATTGAACCTATAC
TTGACCTTGCGTACAAGCCTATTATCCTATCGCTTGTCTTACCCACCTCTTTTGGTTCCTTAGAAAGAAAGCTTCAAACA
GCACCATTGGCCGAAGCAGACCTGGAAGCTGATCTGCGAGTGAATGAAATTGAACGATTAATATCGCCTTTCATGCTAAA
ATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32009.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis