Browse Element(s) Details


OsAffx.32083.1.S1_at

Description gb:NM_193910.1
DB_XREF= gi:34914903
GEN=B1096D03.15
TID=OsAffx.32083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.15 (B1096D03.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2831011/11Transposable element protein, putative, Transposase_24
LOC_Os12g384106/11hypothetical protein
LOC_Os02g132106/11Transposable element protein, putative, Transposase_24
LOC_Os01g117205/11Transposable element protein, putative, Transposase_24
LOC_Os09g028204/11hypothetical protein
LOC_Os05g209801/11Transposable element protein, putative, Transposase_24
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340Os.45173.1.S1_x_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340OsAffx.21789.1.S1_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28350NANA1+16208088..16208372hypothetical protein
LOC_Os01g28360OsAffx.23429.1.S1_at11/111+16209612..16212549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32083.1.S1_at--413--5133Chr05:12323352..12323376 (25 bp)
GCACAAAATATTAAGCATCCACACA
LOC_Os05g20980
OsAffx.32083.1.S1_at--977--3274Chr09:1321457..1321478 (22 bp)
CAAAATATTAAGCATCCACACACAT
LOC_Os09g02820
OsAffx.32083.1.S1_at--685--3113Chr09:1321457..1321481 (25 bp)
AATATTAAGCATCCACACACATTAG
LOC_Os09g02820
OsAffx.32083.1.S1_at--1160--213Chr09:1321458..1321482 (25 bp)
ATATTAAGCATCCACACACATTAGG
LOC_Os09g02820
OsAffx.32083.1.S1_at--402--133Chr09:1321460..1321484 (25 bp)
ATTAAGCATCCACACACATTAGGAA
LOC_Os09g02820
OsAffx.32083.1.S1_at--455--1273Chr12:23543241..23543265 (25 bp)
AGATATGTTAACGATGCTACTGAAG
LOC_Os12g38410
OsAffx.32083.1.S1_at--281--6513Chr12:23543240..23543264 (25 bp)
GATATGTTAACGATGCTACTGAAGA
LOC_Os12g38410
OsAffx.32083.1.S1_at--398--273Chr12:23543239..23543263 (25 bp)
ATATGTTAACGATGCTACTGAAGAA
LOC_Os12g38410
OsAffx.32083.1.S1_at--789--693Chr12:23543237..23543261 (25 bp)
ATGTTAACGATGCTACTGAAGAAAA
LOC_Os12g38410
OsAffx.32083.1.S1_at--317--6773Chr12:23543235..23543259 (25 bp)
GTTAACGATGCTACTGAAGAAAAAA
LOC_Os12g38410
OsAffx.32083.1.S1_at--197--2333Chr12:23543233..23543256 (24 bp)
AACGATGCTACTGAAGAAAAAATGA
LOC_Os12g38410
Target Sequence 
GCACAAAATATTAAGCATCCACACACATTAGGAAGAAAGAGTTTTGCAAGAAAGAGGAAAGAGCTAGAAGTTAATGGAGT
GGAGGTGGACCGAGCAACCTTCTTTGATGAATGCCATAAGACGAAAGATGGCAGATATGTTAACGATGCTACTGAAGAAA
AAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis