Browse Element(s) Details


OsAffx.32189.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32189.1
CNT=1
FEA=DNA_10
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF62 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6067011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32189.1.S1_x_at--79--4957Chr10:10487712..10487736 (25 bp)
GCATTAATTGTGACTTCCTCAGTCT
NONE
OsAffx.32189.1.S1_x_at--523--7375Chr10:10487721..10487745 (25 bp)
GTGACTTCCTCAGTCTTAGTCATTA
NONE
OsAffx.32189.1.S1_x_at--277--7154Chr04:9159290..9159314 (25 bp)
GTCTTAGTCATTAGTGTACCCCTTG
NONE
OsAffx.32189.1.S1_x_at--906--7135Chr05:12901320..12901344 (25 bp)
GTCATTAGTGTACCCCTTGTATTTG
NONE
OsAffx.32189.1.S1_x_at--77--10076Chr05:12901325..12901349 (25 bp)
TAGTGTACCCCTTGTATTTGCTTCT
NONE
OsAffx.32189.1.S1_x_at--841--4315Chr05:12901334..12901358 (25 bp)
CCTTGTATTTGCTTCTCCTGATGGT
NONE
OsAffx.32189.1.S1_x_at--1141--10716Chr10:10487761..10487785 (25 bp)
TTGCTTCTCCTGATGGTTGGTCAAA
NONE
OsAffx.32189.1.S1_x_at--507--10596Chr10:10487765..10487789 (25 bp)
TTCTCCTGATGGTTGGTCAAACAAT
NONE
OsAffx.32189.1.S1_x_at--192--2595Chr10:10487793..10487817 (25 bp)
AACGTTGTATTTTCCGGTACATCAT
NONE
OsAffx.32189.1.S1_x_at--705--6875Chr10:10487799..10487823 (25 bp)
GTATTTTCCGGTACATCATTATGGA
NONE
OsAffx.32189.1.S1_x_at--1051--9595Chr10:10487814..10487838 (25 bp)
TCATTATGGATTGGACTGGTCTTTC
NONE
Target Sequence 
GCATTAATTGTGACTTCCTCAGTCTTAGTCATTAGTGTACCCCTTGTATTTGCTTCTCCTGATGGTTGGTCAAACAATAA
AAACGTTGTATTTTCCGGTACATCATTATGGATTGGACTGGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32189.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis