Browse Element(s) Details


OsAffx.32219.1.A1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32219.1
CNT=1
FEA=DNA_80
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF63 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2464011/11Terpene synthase family, metal binding domain containing protein
LOC_Os06g294901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g24630Os.41695.3.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.5.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.15.S1_s_at8/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.2.S1_x_at7/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.4.S1_x_at1/113+14005652..14008054hypothetical protein
LOC_Os03g24640OsAffx.13006.1.S1_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24640OsAffx.32219.1.A1_x_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24650OsAffx.13007.1.S1_at11/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24650OsAffx.25211.1.S1_x_at1/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24680OsAffx.3312.1.S1_at11/113+14039456..14045329Terpene synthase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32219.1.A1_x_at--287--9579Chr12:20895874..20895898 (25 bp)
TCTTCTAATCAATGGTGGGCCAATA
NONE
OsAffx.32219.1.A1_x_at--595--819Chr12:20895885..20895909 (25 bp)
ATGGTGGGCCAATAATGAATTTTTT
NONE
OsAffx.32219.1.A1_x_at--1000--4959Chr12:20895911..20895935 (25 bp)
GCATATGTATTAAGACGCTTGGCCT
NONE
OsAffx.32219.1.A1_x_at--199--2778Chr12:20895922..20895946 (25 bp)
AAGACGCTTGGCCTGATTTCGAAAT
NONE
OsAffx.32219.1.A1_x_at--1106--1816Chr12:20895925..20895949 (25 bp)
ACGCTTGGCCTGATTTCGAAATTGT
NONE
OsAffx.32219.1.A1_x_at--20--8476Chr12:20895930..20895954 (25 bp)
TGGCCTGATTTCGAAATTGTCCAGA
NONE
OsAffx.32219.1.A1_x_at--1051--6517Chr12:20895936..20895960 (25 bp)
GATTTCGAAATTGTCCAGAGTTTTT
NONE
OsAffx.32219.1.A1_x_at--362--3179Chr12:20895944..20895968 (25 bp)
AATTGTCCAGAGTTTTTTATGTAGT
NONE
OsAffx.32219.1.A1_x_at--898--6819Chr12:20895955..20895979 (25 bp)
GTTTTTTATGTAGTTTTCATTGCAA
NONE
OsAffx.32219.1.A1_x_at--945--5139Chr12:20895976..20896000 (25 bp)
GCAAAATGATGGATCTCCTTCCGTA
NONE
OsAffx.32219.1.A1_x_at--311--719Chr12:20895981..20896005 (25 bp)
ATGATGGATCTCCTTCCGTAACTTT
NONE
Target Sequence 
TCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAG
AGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32219.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis