Browse Element(s) Details


OsAffx.3236.1.S1_at

Description tigr:9631.m01359
TID=OsAffx.3236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1419011/11RNA-binding region containing protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3236.1.S1_at--319--6391Chr03:7678401..7678425 (25 bp)
GATCGTCGAGGCCGTTGTCATCGCC
LOC_Os03g14190
OsAffx.3236.1.S1_at--714--10231Chr03:7678246..7678267 (22 bp)
TTTGTGACGTTCAGGGACCCCGACG
LOC_Os03g14190
OsAffx.3236.1.S1_at--475--8931Chr03:7678242..7678266 (25 bp)
TGACGTTCAGGGACCCCGACGGCGC
LOC_Os03g14190
OsAffx.3236.1.S1_at--1017--5731Chr03:7678183..7678207 (25 bp)
GACGGGAGAAGGGCCAACTGCAACC
LOC_Os03g14190
OsAffx.3236.1.S1_at--424--4371Chr03:7678170..7678194 (25 bp)
CCAACTGCAACCTGGCGGCGTTCGG
LOC_Os03g14190
OsAffx.3236.1.S1_at--820--7231Chr03:7678031..7678147 (25 bp)
GTCGCGGCGCCGTTTGGGATGGCCA
LOC_Os03g14190
OsAffx.3236.1.S1_at--493--8011Chr03:7678015..7678039 (25 bp)
GGATGGCCAGATTGAGGCCCGCAAT
LOC_Os03g14190
OsAffx.3236.1.S1_at--696--6591Chr03:7678006..7678030 (25 bp)
GATTGAGGCCCGCAATGATCGCGTC
LOC_Os03g14190
OsAffx.3236.1.S1_at--813--891Chr03:7678001..7678025 (25 bp)
AGGCCCGCAATGATCGCGTCGTCTT
LOC_Os03g14190
OsAffx.3236.1.S1_at--52--7211Chr03:7677984..7678008 (25 bp)
GTCGTCTTCGTCGTACCAGGGCTCT
LOC_Os03g14190
OsAffx.3236.1.S1_at--18--7151Chr03:7677981..7678005 (25 bp)
GTCTTCGTCGTACCAGGGCTCTGCT
LOC_Os03g14190
Target Sequence 
GATCGTCGAGGCCGTTGTCATCGCCGACAAGCACACCGGCCGCTCCAAGGGCTACGGTTTTGTGACGTTCAGGGACCCCG
ACGGCGCGGCGCGGGCGCTGCAGGACCCGACGCCGGTGATCGACGGGAGAAGGGCCAACTGCAACCTGGCGGCGTTCGGC
GCGGCGCGGCGCGTGCACCCTGTCGCGGCGCCGTTTGGGATGGCCAGATTGAGGCCCGCAATGATCGCGTCGTCTTCGTC
GTACCAGGGCTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis