Browse Element(s) Details


OsAffx.3249.1.S1_at

Description tigr:9631.m01475
TID=OsAffx.3249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1530010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3249.1.S1_at--1096--1831Chr03:8351614..8351638 (25 bp)
ACGAAGAGAACGATCCCGCGGTCGG
LOC_Os03g15300
OsAffx.3249.1.S1_at--631--2691Chr03:8351588..8351612 (25 bp)
AAGCTGCTGTCTCCCAGGCCTGTGA
LOC_Os03g15300
OsAffx.3249.1.S1_at--251--891Chr03:8351573..8351597 (25 bp)
AGGCCTGTGAGCTCCAGAACAATGG
LOC_Os03g15300
OsAffx.3249.1.S1_at--559--6591Chr03:8351541..8351565 (25 bp)
GATTGCAGCCTGCACAGCGAGGCAA
LOC_Os03g15300
OsAffx.3249.1.S1_at--1088--6191Chr03:8351523..8351547 (25 bp)
GAGGCAACGTGTTGGTCACTTCGTC
LOC_Os03g15300
OsAffx.3249.1.S1_at--814--7091Chr03:8351509..8351533 (25 bp)
GTCACTTCGTCTTCAGAGGTTCGGC
LOC_Os03g15300
OsAffx.3249.1.S1_at--1011--8511Chr03:8351439..8351463 (25 bp)
TGGACACGTTCGTACGCCACATGTA
LOC_Os03g15300
OsAffx.3249.1.S1_at--629--5991NONE
GAGACGGTGTTCTGCAGACGACCGA
NONE
OsAffx.3249.1.S1_at--118--5851Chr03:8350627..8350651 (25 bp)
GACCATCAGAACACATCCACAAGTA
LOC_Os03g15300
OsAffx.3249.1.S1_at--55--6811Chr03:8350605..8350629 (25 bp)
GTATTTAAGTGGACCTTCACGGCTA
LOC_Os03g15300
OsAffx.3249.1.S1_at--1133--1931Chr03:8350587..8350611 (25 bp)
ACGGCTAAAATTACAGCTCACCTAT
LOC_Os03g15300
Target Sequence 
ACGAAGAGAACGATCCCGCGGTCGGGAAGCTGCTGTCTCCCAGGCCTGTGAGCTCCAGAACAATGGAGGGCACGATTGCA
GCCTGCACAGCGAGGCAACGTGTTGGTCACTTCGTCTTCAGAGGTTCGGCTCGGAGGGCGGCTGGAGCCACAGCCACGCC
ATGTCGCGGGGCCCGTGGACACGTTCGTACGCCACATGTACAGCGCCAGGCGCTGCCGCGCTGGTGCTCGTCCCGTTCGA
CGGCGTGGCGAAGGCTGTCGATCGGTCGGAGACGGTGTTCTGCAGACGACCGACCATCAGAACACATCCACAAGTATTTA
AGTGGACCTTCACGGCTAAAATTACAGCTCACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis