Browse Element(s) Details


OsAffx.3310.1.S1_at

Description tigr:9631.m02400
TID=OsAffx.3310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EndonucleaseExonucleasephosphatase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2461011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g24630Os.41695.3.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.5.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.15.S1_s_at8/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.2.S1_x_at7/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.4.S1_x_at1/113+14005652..14008054hypothetical protein
LOC_Os03g24640OsAffx.13006.1.S1_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24640OsAffx.32219.1.A1_x_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24650OsAffx.13007.1.S1_at11/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24650OsAffx.25211.1.S1_x_at1/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3310.1.S1_at--1048--5451Chr03:13996564..13996588 (25 bp)
GAACGTGATGAGAGCCACCATTGAG
LOC_Os03g24610
OsAffx.3310.1.S1_at--276--8991Chr03:13996608..13996632 (25 bp)
TGAACCTGTACTGCACCCATCTGGA
LOC_Os03g24610
OsAffx.3310.1.S1_at--237--9371Chr03:13996638..13996662 (25 bp)
TCGACGAGGGCCTCAGGATGAAGCA
LOC_Os03g24610
OsAffx.3310.1.S1_at--58--6331Chr03:13996654..13996678 (25 bp)
GATGAAGCAGGTCGACTCCATCCTC
LOC_Os03g24610
OsAffx.3310.1.S1_at--800--6971Chr03:13996969..13996993 (25 bp)
GTACCACGAGGAGATCGGCAAGCCG
LOC_Os03g24610
OsAffx.3310.1.S1_at--716--1751Chr03:13997019..13997043 (25 bp)
ACCTCAAGGCGAAGCGCTACGTCGA
LOC_Os03g24610
OsAffx.3310.1.S1_at--565--4271Chr03:13997077..13997101 (25 bp)
CCTGGTGGTGGTTCCCAATGGCCAA
LOC_Os03g24610
OsAffx.3310.1.S1_at--841--1911Chr03:13997240..13997264 (25 bp)
ACGGCACGAGGGTGGACTACATCCT
LOC_Os03g24610
OsAffx.3310.1.S1_at--881--2471Chr03:13997275..13997299 (25 bp)
AACTCGCCGTACAACTTCGTGCCGG
LOC_Os03g24610
OsAffx.3310.1.S1_at--458--8651Chr03:13997324..13997348 (25 bp)
TGGGCACCTCGGATCACCACATCGT
LOC_Os03g24610
OsAffx.3310.1.S1_at--576--1711Chr03:13997339..13997363 (25 bp)
ACCACATCGTCATGGTGGACGTCGC
LOC_Os03g24610
Target Sequence 
GAACGTGATGAGAGCCACCATTGAGGTGCCGGGAGCCGGGGAGGTGAACCTGTACTGCACCCATCTGGACCACCTCGACG
AGGGCCTCAGGATGAAGCAGGTCGACTCCATCCTCCGCTTCGCCGACGGCCACCACCACATCCTCGCCGGCGGCCTCAAC
GCCCTCGACGCCTCCGACTACTCCGCCGACCGCTGGGCCGCCATCGCCAAGTACCACGAGGAGATCGGCAAGCCGCCGCC
GAAGTCGGAGGTGATGAGGCACCTCAAGGCGAAGCGCTACGTCGACGCCAAGGACTTCGCCGGAGGGCGTGACGCCGGCC
TGGTGGTGGTTCCCAATGGCCAAGATGTGCAGGGGACGTGCAAGTACGGCACGAGGGTGGACTACATCCTGGCGTCGCCC
AACTCGCCGTACAACTTCGTGCCGGGGTCGTACGCCGTCGTCCCGTCCATGGGCACCTCGGATCACCACATCGTCATGGT
GGACGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis