Browse Element(s) Details


OsAffx.3354.1.S1_at

Description tigr:9631.m02797
TID=OsAffx.3354.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2826011/11Late embryogenesis abundant protein
LOC_Os01g250401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3354.1.S1_at--57--4151Chr03:16231340..16231364 (25 bp)
CGCCGCCAACGTTGTTGACTCAGAA
LOC_Os03g28260
OsAffx.3354.1.S1_at--533--4371Chr03:16231335..16231359 (25 bp)
CCAACGTTGTTGACTCAGAAGGCGT
LOC_Os03g28260
OsAffx.3354.1.S1_at--190--8811Chr03:16231328..16231352 (25 bp)
TGTTGACTCAGAAGGCGTGATGGCC
LOC_Os03g28260
OsAffx.3354.1.S1_at--586--5711Chr03:16231324..16231348 (25 bp)
GACTCAGAAGGCGTGATGGCCTCCA
LOC_Os03g28260
OsAffx.3354.1.S1_at--419--9631Chr03:16231321..16231345 (25 bp)
TCAGAAGGCGTGATGGCCTCCAACG
LOC_Os03g28260
OsAffx.3354.1.S1_at--340--912Chr01:14104669..14104760 (25 bp)
AGGCGTGATGGCCTCCAACGCCACA
LOC_Os01g25040
OsAffx.3354.1.S1_at--363--6231Chr03:16231310..16231334 (25 bp)
GATGGCCTCCAACGCCACACGGAAG
LOC_Os03g28260
OsAffx.3354.1.S1_at--406--2611Chr03:16231300..16231324 (25 bp)
AACGCCACACGGAAGGCGCTCATCT
LOC_Os03g28260
OsAffx.3354.1.S1_at--696--9351Chr03:16231157..16231293 (25 bp)
TCGACAAGGCTCTCCTTCACCAAAG
LOC_Os03g28260
OsAffx.3354.1.S1_at--594--2931Chr03:16231152..16231175 (24 bp)
AAGGCTCTCCTTCACCAAAGTCGTG
LOC_Os03g28260
OsAffx.3354.1.S1_at--716--8311Chr03:16231150..16231174 (25 bp)
GGCTCTCCTTCACCAAAGTCGTGGC
LOC_Os03g28260
Target Sequence 
CGCCGCCAACGTTGTTGACTCAGAAGGCGTGATGGCCTCCAACGCCACACGGAAGGCGCTCATCTCCTTCCTCGACAAGG
CTCTCCTTCACCAAAGTCGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis