Browse Element(s) Details


OsAffx.3560.1.S1_at

Description tigr:9631.m04889
TID=OsAffx.3560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative FK506-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5008011/11immunophilin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3560.1.S1_at--402--8391Chr03:28515632..28515656 (25 bp)
GGCGCGGACTCGACGGACTGGGTGG
LOC_Os03g50080
OsAffx.3560.1.S1_at--773--1511Chr03:28515529..28515553 (25 bp)
AGCAGCTCAAGACCCGCTTCGAGGT
LOC_Os03g50080
OsAffx.3560.1.S1_at--452--1391Chr03:28515520..28515544 (25 bp)
AGACCCGCTTCGAGGTCGCGCAGCA
LOC_Os03g50080
OsAffx.3560.1.S1_at--404--1511Chr03:28515504..28515523 (20 bp)
AGCAGCTGGCCAACACCAAGGACGT
LOC_Os03g50080
OsAffx.3560.1.S1_at--110--8451Chr03:28515395..28515516 (25 bp)
GGCCAACACCAAGGACGTGGAGCAA
LOC_Os03g50080
OsAffx.3560.1.S1_at--403--2771Chr03:28515372..28515396 (25 bp)
AAGAGCAGGAGGTCGTCCTTCCCAA
LOC_Os03g50080
OsAffx.3560.1.S1_at--232--3991Chr03:28515368..28515392 (25 bp)
GCAGGAGGTCGTCCTTCCCAACGGA
LOC_Os03g50080
OsAffx.3560.1.S1_at--1028--5811Chr03:28515269..28515377 (25 bp)
TCCCAACGGAATACGGTACTACGAG
LOC_Os03g50080
OsAffx.3560.1.S1_at--492--5231Chr03:28515261..28515369 (25 bp)
GAATACGGTACTACGAGATGCGAGT
LOC_Os03g50080
OsAffx.3560.1.S1_at--488--7611Chr03:28515210..28515234 (25 bp)
GGGACCTGGTGGTGATCGACCTGAA
LOC_Os03g50080
OsAffx.3560.1.S1_at--483--10611Chr03:28515160..28515184 (25 bp)
TTCGTGGACACGTTCGGCGACGGGA
LOC_Os03g50080
Target Sequence 
GGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTT
CCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGG
AGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCG
GGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis