Browse Element(s) Details


OsAffx.4143.1.S1_x_at

Description tigr:9632.m04933
TID=OsAffx.4143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cobalamin synthesis proteinP47K, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5111011/11Cell division cycle protein 20 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4143.1.S1_x_at--439--2531Chr04:30050716..30050740 (25 bp)
AACTCGATCGACACTGGGTCACAAG
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--300--2871Chr04:30050738..30050762 (25 bp)
AAGTGTGCTCGCTGGTCTGGAACAA
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--1037--4831Chr04:30050778..30050802 (25 bp)
GCTAAGCTCACATGGATTCGCTCAG
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--973--91Chr04:30050793..30050817 (25 bp)
ATTCGCTCAGAATCAGCTCACTTTG
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--776--4791Chr04:30050808..30050832 (25 bp)
GCTCACTTTGTGGAAGTACCCGTCA
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--361--1671Chr04:30050980..30051004 (25 bp)
AGCCCTGATGGTCTCACAGTAGCAT
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--75--5971Chr04:30051019..30051043 (25 bp)
GAGACCCTGAGATTCTGGAACGTAT
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--810--5371Chr04:30051055..30051079 (25 bp)
GAAGCACCCAAGACTGCAACCAAGG
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--351--2651Chr04:30051109..30051133 (25 bp)
AACCACATTCACATCCGTTGAGGAA
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--458--6631Chr04:30051125..30051285 (25 bp)
GTTGAGGAACACAATACCCTTGGTT
LOC_Os04g51110
OsAffx.4143.1.S1_x_at--820--3091Chr04:30051274..30051297 (24 bp)
AATACCCTTGGTTCTGTGATCCAGT
LOC_Os04g51110
Target Sequence 
AACTCGATCGACACTGGGTCACAAGTGTGCTCGCTGGTCTGGAACAAGAATGAGAGAGAGCTGCTAAGCTCACATGGATT
CGCTCAGAATCAGCTCACTTTGTGGAAGTACCCGTCAATGGTTAAGATGGCTGAACTCACTGGCCATACCTCTCGTGTCC
TTTTCACGGCTCAGAGCCCTGATGGTCTCACAGTAGCATCTGCTGCAGCAGATGAGACCCTGAGATTCTGGAACGTATTT
GGGGCTCCTGAAGCACCCAAGACTGCAACCAAGGGTTCCCACACTGGGATGTTCAACAATTCCAACCACATTCACATCCG
TTGAGGAACACAATACCCTTGGTTCTGTGATCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4143.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis