Browse Element(s) Details


OsAffx.4153.1.S1_s_at

Description tigr:9632.m05050
TID=OsAffx.4153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5218011/11expressed protein
LOC_Os06g200803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4153.1.S1_s_at--44--1271Chr04:30781512..30781536 (25 bp)
AGATTTCATCTCACGATGGTCCTGG
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--696--6251Chr04:30781526..30781550 (25 bp)
GATGGTCCTGGTGCACACAAGGTTA
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--874--291Chr04:30781550..30781574 (25 bp)
ATAGCTGTAGCTGCGATCGGTGGAT
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--984--492Chr06:11511243..11511266 (24 bp)
ATCGGTGGATTGAGCTGACCTTCCA
LOC_Os06g20080
OsAffx.4153.1.S1_s_at--279--8931Chr04:30781580..30781604 (25 bp)
TGACCTTCCACTTTATTGCTTTGCT
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--954--9071Chr04:30781596..30781620 (25 bp)
TGCTTTGCTCAGTTAGTACATGACT
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--1056--3972Chr06:11511245..11511347 (25 bp)
CGGTGGAATTTGCTCCGATTGACAA
LOC_Os06g20080
OsAffx.4153.1.S1_s_at--357--9152Chr06:11511349..11511372 (24 bp)
TGCGTTGGTGCTATGTTGATGTCTC
LOC_Os06g20080
OsAffx.4153.1.S1_s_at--606--10711Chr04:30781688..30781712 (25 bp)
TTGATGTCTCGTCTGGAAACCTGGA
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--605--5931Chr04:30781759..30781783 (25 bp)
GAGCATGAGCCGATAACTGTTCTGT
LOC_Os04g52180
OsAffx.4153.1.S1_s_at--1085--2551Chr04:30781773..30781797 (25 bp)
AACTGTTCTGTTGTGCGTCTTTGAA
LOC_Os04g52180
Target Sequence 
AGATTTCATCTCACGATGGTCCTGGTGCACACAAGGTTATAGCTGTAGCTGCGATCGGTGGATTGAGCTGACCTTCCACT
TTATTGCTTTGCTCAGTTAGTACATGACTATCATGATAGTTCTTGAAGTGTATCAGCGGTGGAATTTGCTCCGATTGACA
ATGCGTTGGTGCTATGTTGATGTCTCGTCTGGAAACCTGGAAAAAAGCATGTTGTTGGATGCCAATTTGAGTAAATTTAG
CTGCAAGGAGCATGAGCCGATAACTGTTCTGTTGTGCGTCTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4153.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis