Browse Element(s) Details


OsAffx.4254.1.S1_at

Description tigr:9633.m00438
TID=OsAffx.4254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0507011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05030Os.7770.1.S1_at11/115+2427251..2428050expressed protein
LOC_Os05g05040OsAffx.26738.1.S1_at11/115+2430723..2431318expressed protein
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4254.1.S1_at--540--8531Chr05:2446028..2446052 (25 bp)
TGGACGGCGAAGTCCATGTCCAGAG
LOC_Os05g05070
OsAffx.4254.1.S1_at--168--1931Chr05:2446025..2446049 (25 bp)
ACGGCGAAGTCCATGTCCAGAGGGT
LOC_Os05g05070
OsAffx.4254.1.S1_at--589--2851Chr05:2446019..2446043 (25 bp)
AAGTCCATGTCCAGAGGGTGGACAA
LOC_Os05g05070
OsAffx.4254.1.S1_at--632--4471Chr05:2445935..2445959 (25 bp)
GCCTGATGAACATCGACGAGATAGC
LOC_Os05g05070
OsAffx.4254.1.S1_at--84--5491Chr05:2445928..2445952 (25 bp)
GAACATCGACGAGATAGCCGCGGAT
LOC_Os05g05070
OsAffx.4254.1.S1_at--900--2091Chr05:2445926..2445950 (25 bp)
ACATCGACGAGATAGCCGCGGATTT
LOC_Os05g05070
OsAffx.4254.1.S1_at--316--531Chr05:2445924..2445948 (25 bp)
ATCGACGAGATAGCCGCGGATTTCA
LOC_Os05g05070
OsAffx.4254.1.S1_at--1117--6031Chr05:2445918..2445942 (25 bp)
GAGATAGCCGCGGATTTCATCCGGA
LOC_Os05g05070
OsAffx.4254.1.S1_at--994--291Chr05:2445915..2445939 (25 bp)
ATAGCCGCGGATTTCATCCGGAGGA
LOC_Os05g05070
OsAffx.4254.1.S1_at--876--4511Chr05:2445912..2445936 (25 bp)
GCCGCGGATTTCATCCGGAGGAAGA
LOC_Os05g05070
OsAffx.4254.1.S1_at--934--1831Chr05:2445901..2445925 (25 bp)
CATCCGGAGGAAGAAAGAGGCGTTC
LOC_Os05g05070
Target Sequence 
TGGACGGCGAAGTCCATGTCCAGAGGGTGGACAAGATCGTGGTGGTCATGAACGGGGTGGCGCCGACGGCATCGGAGAAG
AAGGCCGGGGACGGCCTGATGAACATCGACGAGATAGCCGCGGATTTCATCCGGAGGAAGAAAGAGGCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis