Browse Element(s) Details


OsAffx.4307.1.S1_at

Description tigr:9633.m01044
TID=OsAffx.4307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1176011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4307.1.S1_at--859--1231Chr05:6654759..6654779 (21 bp)
AGTTGCCTATGCCTCACAATGCCAC
LOC_Os05g11760
OsAffx.4307.1.S1_at--302--10211Chr05:6654727..6654751 (25 bp)
TATTCACCCTCGTCAACAATGCCGT
LOC_Os05g11760
OsAffx.4307.1.S1_at--428--1831Chr05:6654695..6654719 (25 bp)
ACGCTCATCGTCAAGCTGTTCGAGG
LOC_Os05g11760
OsAffx.4307.1.S1_at--980--7711Chr05:6654661..6654685 (25 bp)
GGGTGTCATTGCTAGGTGCCCGCAT
LOC_Os05g11760
OsAffx.4307.1.S1_at--265--7791Chr05:6654647..6654671 (25 bp)
GGTGCCCGCATGCTGTCGTCAAGAC
LOC_Os05g11760
OsAffx.4307.1.S1_at--295--4731Chr05:6654636..6654660 (25 bp)
GCTGTCGTCAAGACCGTCCATAAGA
LOC_Os05g11760
OsAffx.4307.1.S1_at--903--2811Chr05:6654615..6654639 (25 bp)
AAGATTTTCTCTTTATCACACCAGA
LOC_Os05g11760
OsAffx.4307.1.S1_at--70--391Chr05:6654601..6654625 (25 bp)
ATCACACCAGAGTCATCGGTTGTCC
LOC_Os05g11760
OsAffx.4307.1.S1_at--895--491Chr05:6654587..6654611 (25 bp)
ATCGGTTGTCCATCCATGATGCTTT
LOC_Os05g11760
OsAffx.4307.1.S1_at--577--711Chr05:6654572..6654596 (25 bp)
ATGATGCTTTCTCCTCTCGTGTTGG
LOC_Os05g11760
OsAffx.4307.1.S1_at--872--9251Chr05:6654561..6654585 (25 bp)
TCCTCTCGTGTTGGAGTCGTCATGC
LOC_Os05g11760
Target Sequence 
AGTTGCCTATGCCTCACAATGCCACCGACGTCTATTCACCCTCGTCAACAATGCCGTCTTCCTCACGCTCATCGTCAAGC
TGTTCGAGGAGAACATCGGGGTGTCATTGCTAGGTGCCCGCATGCTGTCGTCAAGACCGTCCATAAGATTTTCTCTTTAT
CACACCAGAGTCATCGGTTGTCCATCCATGATGCTTTCTCCTCTCGTGTTGGAGTCGTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis