Browse Element(s) Details


OsAffx.4427.1.S1_at

Description tigr:9633.m02297
TID=OsAffx.4427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2551011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4427.1.S1_at--1094--4671Chr05:14748101..14748125 (25 bp)
GCGGTGCTCGTTGCCAAGGTGGGAA
LOC_Os05g25510
OsAffx.4427.1.S1_at--541--1091Chr05:14748144..14748168 (25 bp)
AGTGGCAAAGCAGCATCTCAGTGGT
LOC_Os05g25510
OsAffx.4427.1.S1_at--328--8511Chr05:14748146..14748170 (25 bp)
TGGCAAAGCAGCATCTCAGTGGTGG
LOC_Os05g25510
OsAffx.4427.1.S1_at--655--271Chr05:14748177..14748201 (25 bp)
ATAGGTTGGAGGTACCAGCTGGCAC
LOC_Os05g25510
OsAffx.4427.1.S1_at--969--6611Chr05:14748181..14748205 (25 bp)
GTTGGAGGTACCAGCTGGCACCTAT
LOC_Os05g25510
OsAffx.4427.1.S1_at--99--8031Chr05:14748184..14748208 (25 bp)
GGAGGTACCAGCTGGCACCTATGGT
LOC_Os05g25510
OsAffx.4427.1.S1_at--791--6971Chr05:14748188..14748212 (25 bp)
GTACCAGCTGGCACCTATGGTGACG
LOC_Os05g25510
OsAffx.4427.1.S1_at--15--1631Chr05:14748193..14748217 (25 bp)
AGCTGGCACCTATGGTGACGCGCTA
LOC_Os05g25510
OsAffx.4427.1.S1_at--309--8511Chr05:14748196..14748220 (25 bp)
TGGCACCTATGGTGACGCGCTAGGC
LOC_Os05g25510
OsAffx.4427.1.S1_at--129--7771Chr05:14748206..14748230 (25 bp)
GGTGACGCGCTAGGCGGGCGAGAAT
LOC_Os05g25510
OsAffx.4427.1.S1_at--1011--4851Chr05:14748214..14748238 (25 bp)
GCTAGGCGGGCGAGAATCGGAGCTC
LOC_Os05g25510
Target Sequence 
GCGGTGCTCGTTGCCAAGGTGGGAAGAGGAGAGAGGCCACAGCAGTGGCAAAGCAGCATCTCAGTGGTGGGGAAGGATAG
GTTGGAGGTACCAGCTGGCACCTATGGTGACGCGCTAGGCGGGCGAGAATCGGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis