Browse Element(s) Details


OsAffx.449.1.A1_x_at

Description gb:NM_194481.1
DB_XREF= gi:37530321
TID=OsAffx.449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1136E01.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01200OsAffx.447.1.S1_at11/1110+116265..117206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.449.1.A1_x_at--1137--6211Chr10:102560..102584 (25 bp)
GAGGCCGGATCTGCCGCTGCGATGA
LOC_Os10g01150
OsAffx.449.1.A1_x_at--1098--4211Chr10:102514..102538 (25 bp)
CCGCGACGACGTGGGTAGCCAGATC
LOC_Os10g01150
OsAffx.449.1.A1_x_at--711--7691Chr10:102502..102526 (25 bp)
GGGTAGCCAGATCCGTAGCCACGAT
LOC_Os10g01150
OsAffx.449.1.A1_x_at--685--6971Chr10:102500..102524 (25 bp)
GTAGCCAGATCCGTAGCCACGATGA
LOC_Os10g01150
OsAffx.449.1.A1_x_at--494--4411Chr10:102497..102521 (25 bp)
GCCAGATCCGTAGCCACGATGACGG
LOC_Os10g01150
OsAffx.449.1.A1_x_at--240--1671Chr10:102408..102432 (25 bp)
AGCCCGATAGGGTAGGGAGGCCGCT
LOC_Os10g01150
OsAffx.449.1.A1_x_at--363--8011Chr10:102393..102417 (25 bp)
GGAGGCCGCTGCGACGACGACATAA
LOC_Os10g01150
OsAffx.449.1.A1_x_at--392--5791Chr10:102378..102402 (25 bp)
GACGACATAATCACTACTGGGCCGC
LOC_Os10g01150
OsAffx.449.1.A1_x_at--868--5671Chr10:102375..102399 (25 bp)
GACATAATCACTACTGGGCCGCGGG
LOC_Os10g01150
OsAffx.449.1.A1_x_at--861--351Chr10:102372..102396 (25 bp)
ATAATCACTACTGGGCCGCGGGCAG
LOC_Os10g01150
OsAffx.449.1.A1_x_at--509--1911Chr10:102336..102360 (25 bp)
ACGGGAGAGCCGTGACGGGCTCCTC
LOC_Os10g01150
Target Sequence 
GAGGCCGGATCTGCCGCTGCGATGACAGGGGTGGCTGGATCCGCCGCCGCGACGACGTGGGTAGCCAGATCCGTAGCCAC
GATGACGGGGGAGGCTGGAGCCGCCGCTACCACGACGGGGGGTGGCCGGATCCGCCGCCACGACGACGGGGGAGCCCGAT
AGGGTAGGGAGGCCGCTGCGACGACGACATAATCACTACTGGGCCGCGGGCAGCCGATCCGGCCACGGGAGAGCCGTGAC
GGGCTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.449.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis