Browse Element(s) Details


OsAffx.4520.1.S1_at

Description tigr:9633.m03264
TID=OsAffx.4520.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3513011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35100Os.26886.1.S1_x_at8/115+20756664..20760016transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35100Os.26886.3.S1_x_at6/115+20756664..20760016transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35110Os.7408.1.S1_at11/115+20763988..20767906Leucine Rich Repeat family protein, expressed
LOC_Os05g35120Os.26886.2.S1_s_at9/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.6.S1_s_at8/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.16467.1.S1_at7/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.3.S1_x_at6/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.3425.1.S1_at1/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35130OsAffx.4520.1.S1_at11/115+20784374..20784898hypothetical protein
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4520.1.S1_at--646--7591Chr05:20784412..20784436 (25 bp)
GGGCAGGGACATGTACCAAATTTAC
LOC_Os05g35130
OsAffx.4520.1.S1_at--168--9611Chr05:20784455..20784479 (25 bp)
TCATGGTACCTACTCAAAGACCGTA
LOC_Os05g35130
OsAffx.4520.1.S1_at--86--2431Chr05:20784504..20784528 (25 bp)
AAAAGTTATTTGCTTCTGCGACCAA
LOC_Os05g35130
OsAffx.4520.1.S1_at--986--7791Chr05:20784545..20784569 (25 bp)
GGTCGCAAAGCGAGCTTCGTGGAAT
LOC_Os05g35130
OsAffx.4520.1.S1_at--941--10451Chr05:20784602..20784626 (25 bp)
TTAGCTCAGACCTTATACAACCATG
LOC_Os05g35130
OsAffx.4520.1.S1_at--1123--9871Chr05:20784683..20784707 (25 bp)
TACATCAGGCACAATCTCACAGTCG
LOC_Os05g35130
OsAffx.4520.1.S1_at--1075--3731Chr05:20784698..20784722 (25 bp)
CTCACAGTCGAGCTAGCCAAGGAAT
LOC_Os05g35130
OsAffx.4520.1.S1_at--1153--931Chr05:20784717..20784741 (25 bp)
AGGAATTCTTTGAGGTGTTCTACCA
LOC_Os05g35130
OsAffx.4520.1.S1_at--867--9991Chr05:20784751..20784775 (25 bp)
TAGCGACATTGTCCTCACAGAAGGT
LOC_Os05g35130
OsAffx.4520.1.S1_at--1149--7191Chr05:20784776..20784800 (25 bp)
GTCGAGGACACCATAACTTGGCGAT
LOC_Os05g35130
OsAffx.4520.1.S1_at--723--6751Chr05:20784829..20784853 (25 bp)
GTTAGCCTACATAGCACAGTTCAAT
LOC_Os05g35130
Target Sequence 
GGGCAGGGACATGTACCAAATTTACAATAGAAAAAGTGGTACCTCATGGTACCTACTCAAAGACCGTAGAATTACTCGTG
ATAAAATGGACAAAAAGTTATTTGCTTCTGCGACCAAAGTGACAATAGGTGATGGTCGCAAAGCGAGCTTCGTGGAATCA
AATTGGATTGGCAAACAACCACTGAAGGAGTTAGCTCAGACCTTATACAACCATGCCAAAAGGAAAGGTAGGACGGTCCA
AGAAGGACTAGCAAATGACCAATGGATACTATACATCAGGCACAATCTCACAGTCGAGCTAGCCAAGGAATTCTTTGAGG
TGTTCTACCATGTGTGGAATAGCGACATTGTCCTCACAGAAGGTGTCGAGGACACCATAACTTGGCGATGGACGAGAAAT
GAAAAGTACTATGCAAAGTTAGCCTACATAGCACAGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis