Browse Element(s) Details


OsAffx.4843.1.S1_at

Description tigr:9634.m01525
TID=OsAffx.4843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g029641/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02920NANA11+1007611..1009010hypothetical protein
LOC_Os11g02930OsAffx.30787.3.S1_x_at11/1111+1010286..1011921hypothetical protein
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4843.1.S1_at--970--4651Chr06:8640460..8640484 (25 bp)
GCGTCGCCACTGCTGCAACTGGAAC
NONE
OsAffx.4843.1.S1_at--1066--5131Chr06:8640474..8640498 (25 bp)
GCAACTGGAACTCGCGGAAAATCGC
NONE
OsAffx.4843.1.S1_at--507--8151Chr06:8640489..8640513 (25 bp)
GGAAAATCGCGCATGCCCACAACTG
NONE
OsAffx.4843.1.S1_at--772--4671Chr06:8640529..8640553 (25 bp)
GCGGAAAATAGCTGGACGACATCTT
NONE
OsAffx.4843.1.S1_at--793--5971Chr06:8642650..8642674 (25 bp)
GAGAACAGTTGGACGACTACTCGAT
NONE
OsAffx.4843.1.S1_at--710--3431Chr06:8642655..8642679 (25 bp)
CAGTTGGACGACTACTCGATTACTC
NONE
OsAffx.4843.1.S1_at--172--8991NONE
TGAAGCAATGCGGAAACGGTATCAT
NONE
OsAffx.4843.1.S1_at--394--5551Chr06:8643390..8643414 (25 bp)
GAAACGGTATCATTACGATCGAGAA
NONE
OsAffx.4843.1.S1_at--218--6812Chr11:1032253..1032412 (25 bp)
GTTTTCACCCCTAATCGGTGATGAG
LOC_Os11g02964
OsAffx.4843.1.S1_at--818--7391Chr06:8643443..8643467 (25 bp)
GTGATGAGCTTAGACAGACCCAATC
NONE
OsAffx.4843.1.S1_at--364--1392Chr06:8643458..8643482 (25 bp)
AGACCCAATCTGGTGCCTACAGAGG
NONE
Target Sequence 
GCGTCGCCACTGCTGCAACTGGAACTCGCGGAAAATCGCGCATGCCCACAACTGCCGCGGCGGAAAATCGCGGAAAATAG
CTGGACGACATCTTCTTCCATAGAAGGGCTAGGGAGAAAAATATCATGGGAAGGGAGAGGAAAGTCATATTTTAAGGCTT
TGTCGCAGATTCTACAACTACTCGATTACTCGAGAACAGTTGGACGACTACTCGATTACTCGAGAACAGTTGATGGAGTT
CGACAAAGATTACGGAATGAAGCAATGCGGAAACGGTATCATTACGATCGAGAAATTTTCATACCGTTTTCACCCCTAAT
CGGTGATGAGCTTAGACAGACCCAATCTGGTGCCTACAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis