Browse Element(s) Details


OsAffx.4879.1.S1_at

Description tigr:9634.m01955
TID=OsAffx.4879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nucleoid DNA-binding protein cnd41-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2014011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified
LOC_Os06g20180OsAffx.4880.1.S1_at11/116+11574999..11576595hypothetical protein
LOC_Os06g20190OsAffx.27726.1.S1_at11/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20190OsAffx.14464.1.S1_x_at1/116+11580192..11583433Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4879.1.S1_at--475--1171Chr06:11555404..11555428 (25 bp)
AGTACACGGCGATGCTGCGGAAGCC
LOC_Os06g20140
OsAffx.4879.1.S1_at--222--2091Chr06:11555470..11555494 (25 bp)
ACATCGGCGGGTACGTCCTGCCGGT
LOC_Os06g20140
OsAffx.4879.1.S1_at--706--4131Chr06:11555575..11555599 (25 bp)
CGCTGCTCCGGGACAGGTTCAGGCT
LOC_Os06g20140
OsAffx.4879.1.S1_at--728--7611Chr06:11555584..11555608 (25 bp)
GGGACAGGTTCAGGCTCACCATGGA
LOC_Os06g20140
OsAffx.4879.1.S1_at--450--6751Chr06:11555591..11555615 (25 bp)
GTTCAGGCTCACCATGGAGCGGTAC
LOC_Os06g20140
OsAffx.4879.1.S1_at--255--9391Chr06:11555680..11555704 (25 bp)
TCGTCCCGGCGGTGTCGTTCAGGTT
LOC_Os06g20140
OsAffx.4879.1.S1_at--1083--7691Chr06:11555740..11555764 (25 bp)
GGGTCATGATCTTCCTGGACGAGAA
LOC_Os06g20140
OsAffx.4879.1.S1_at--982--4071Chr06:11555759..11555783 (25 bp)
CGAGAACGTCGGGTGCCTCGCGTTC
LOC_Os06g20140
OsAffx.4879.1.S1_at--378--8291Chr06:11555802..11555826 (25 bp)
GGCTTGCCTCTGTCCATCATCGGGA
LOC_Os06g20140
OsAffx.4879.1.S1_at--149--8171Chr06:11555824..11555848 (25 bp)
GGAACACGCAGCAGCGATCGGCGGA
LOC_Os06g20140
OsAffx.4879.1.S1_at--671--4631Chr06:11555837..11555861 (25 bp)
GCGATCGGCGGAGGTGATCTACGAC
LOC_Os06g20140
Target Sequence 
AGTACACGGCGATGCTGCGGAAGCCGCAGTTCCCGTCCTTCTACTTCGTCGAGCTCGTCTCCATCGACATCGGCGGGTAC
GTCCTGCCGGTGCCGCCGGCCGTGTTCACTCGCGGCGGCACCCTCCTCGACTCCGGCACCGTCCTCACCTACCTCCCGGC
GCAGGCGTACGCGCTGCTCCGGGACAGGTTCAGGCTCACCATGGAGCGGTACACGCCGGCGCCGCCGAACGACGTGCTCG
ACGCGTGCTACGACTTCGCCGGCGAGAGCGAGGTCGTCGTCCCGGCGGTGTCGTTCAGGTTCGGCGACGGCGCCGTGTTC
GAGCTCGACTTCTTCGGGGTCATGATCTTCCTGGACGAGAACGTCGGGTGCCTCGCGTTCGCGGCGATGGACACCGGCGG
CTTGCCTCTGTCCATCATCGGGAACACGCAGCAGCGATCGGCGGAGGTGATCTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis