Browse Element(s) Details


OsAffx.4900.1.S1_at

Description tigr:9634.m02191
TID=OsAffx.4900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2235011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22300OsAffx.29789.1.S1_x_at7/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.29789.3.S1_x_at3/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.31885.2.S1_x_at2/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22310NANA6+12951373..12952942hypothetical protein
LOC_Os06g22320OsAffx.13097.1.S1_s_at5/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22320OsAffx.15500.1.S1_x_at1/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22330Os.52267.1.S1_at11/116+12961886..12965474expressed protein
LOC_Os06g22340Os.49566.1.S1_at11/116+12966331..12968078Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein
LOC_Os06g22390Os.52552.1.S1_at11/116+13002029..13002794expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4900.1.S1_at--632--10371Chr06:12974118..12974142 (25 bp)
TTTTACAGGTCCACATTTCTCAAGG
LOC_Os06g22350
OsAffx.4900.1.S1_at--246--5951Chr06:12973650..12974029 (25 bp)
GAGCACAGGTACTCTCAGTTTGGAA
LOC_Os06g22350
OsAffx.4900.1.S1_at--1096--10011Chr06:12973529..12973967 (25 bp)
TAGAAATTTGCCTCCTAAGGATCAA
LOC_Os06g22350
OsAffx.4900.1.S1_at--734--9511Chr06:12973258..12973282 (25 bp)
TCTAACGGATAACTCCACCATTGCT
LOC_Os06g22350
OsAffx.4900.1.S1_at--940--5971Chr06:12973219..12973243 (25 bp)
GAGAAATTTTCTAGAGGAGCCAGGT
LOC_Os06g22350
OsAffx.4900.1.S1_at--113--7831Chr06:12973197..12973221 (25 bp)
GGTCACTGGAGTTTAAGGCCTTTGT
LOC_Os06g22350
OsAffx.4900.1.S1_at--1058--291Chr06:12973182..12973206 (25 bp)
AGGCCTTTGTGGACCCAAATTATCT
LOC_Os06g22350
OsAffx.4900.1.S1_at--546--4371Chr06:12973168..12973192 (25 bp)
CCAAATTATCTCTTCCACTTCAATT
LOC_Os06g22350
OsAffx.4900.1.S1_at--955--9811Chr06:12973138..12973162 (25 bp)
TATACAGGTTCGATGGGTTCCAAGA
LOC_Os06g22350
OsAffx.4900.1.S1_at--1045--5331Chr06:12973113..12973137 (25 bp)
GAAGTTAACAAGATGGCCGACAAAT
LOC_Os06g22350
OsAffx.4900.1.S1_at--163--10431Chr06:12973089..12973113 (25 bp)
TTAGCGAAGGAAGCCAAGTCCGGTA
LOC_Os06g22350
Target Sequence 
TTTTACAGGTCCACATTTCTCAAGGAAGCACAGAAGACAAACTCTGTTGGAAATACTCAAAAAAGGTGAATGCAATACAA
AAAAGCGCTTACAAGGAATTCATTAAAAGAGAGGAGCACAGGTACTCTCAGTTTGGAAAGATAGAAATTTGCCTCCTAAG
GATCAAGAGCAGTCAGAGCTGGAGCATAGAAGAATGGACAGCATTCCCAATGGAAACAGGTACCACTTTTCTAACGGATA
ACTCCACCATTGCTGATACTGCAAAAAGGAGAAATTTTCTAGAGGAGCCAGGTCACTGGAGTTTAAGGCCTTTGTGGACC
CAAATTATCTCTTCCACTTCAATTGATCTTATACAGGTTCGATGGGTTCCAAGAGAAGTTAACAAGATGGCCGACAAATT
AGCGAAGGAAGCCAAGTCCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis