Browse Element(s) Details

OsAffx.4907.1.S1_x_at

Description

tigr:9634.m02256
TID=OsAffx.4907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Xet3 protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22919	11/11	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22880	OsAffx.15563.1.S1_at	11/11	6	+	13361904..13362250	hypothetical protein
LOC_Os06g22890	Os.26886.6.S1_s_at	7/11	6	+	13365401..13368654	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890	Os.26886.2.S1_s_at	6/11	6	+	13365401..13368654	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890	OsAffx.16467.1.S1_at	1/11	6	+	13365401..13368654	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900	Os.26886.3.S1_x_at	4/11	6	+	13370229..13374235	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900	OsAffx.3774.1.S1_at	1/11	6	+	13370229..13374235	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22919	OsAffx.4907.1.S1_x_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.33878.1.S1_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_x_at	4/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	OsAffx.28164.2.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.52051.1.S1_x_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.27037.1.A1_at	1/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22940	OsAffx.15565.1.S1_at	10/11	6	+	13390514..13392026	hypothetical protein
LOC_Os06g22950	NA	NA	6	+	13393970..13396304	hypothetical protein
LOC_Os06g22960	Os.28214.2.S1_x_at	11/11	6	+	13406320..13407829	aquaporin TIP-type RB7-18C, putative, expressed
LOC_Os06g22970	OsAffx.15567.2.S1_s_at	11/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.20192.1.S1_at	4/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.24960.1.S1_at	1/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22980	Os.53359.1.S1_at	11/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed
LOC_Os06g22980	Os.57510.1.S1_x_at	1/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005618	cellular_component	cell wall
GO:0005737	cellular_component	cytoplasm
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4907.1.S1_x_at--839--669	1	Chr06:13388864..13388888 (25 bp)	GTTCCCGACAAAGCGGCCGATGTAC	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--34--1031	1	Chr06:13388966..13388990 (25 bp)	TTTCGTCGCCGAGTACCGTGACATC	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--195--737	1	Chr06:13388983..13389007 (25 bp)	GTGACATCGGCCTCAACATCTGTGA	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--966--833	1	Chr06:13389136..13389160 (25 bp)	GGCTGTGCCAGCTGAGCGACAAGCA	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--403--891	1	Chr06:13389148..13389172 (25 bp)	TGAGCGACAAGCAGCTGCGGCAGAT	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--1148--89	1	Chr06:13389175..13389199 (25 bp)	AGGCGGTGCAGCTGGGCTACACCAT	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--715--803	1	Chr06:13389248..13389272 (25 bp)	GGAGTGCAGCATGCCGCAGTACTGA	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--451--503	1	Chr06:13389263..13389287 (25 bp)	GCAGTACTGATCATGCATGCGCATG	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--712--353	1	Chr06:13389278..13389302 (25 bp)	CATGCGCATGTCTAGTTTCACTTGA	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--637--683	1	Chr06:13389292..13389316 (25 bp)	GTTTCACTTGATTTTTCATGGCATG	LOC_Os06g22919
OsAffx.4907.1.S1_x_at--11--881	1	Chr06:13389401..13389425 (25 bp)	TGTTCGTGTACTCATGTTGTTCTTC	LOC_Os06g22919

Target Sequence

GTTCCCGACAAAGCGGCCGATGTACGCCTTCTCCAGCATCTGGGCGGCGGAGGATTGGGCCACGCAGGGTGGCCGCGTCA
AGACGGACTGGACCAAGGCCCCTTTCGTCGCCGAGTACCGTGACATCGGCCTCAACATCTGTGAGTGCCCCGGCTCAGGC
TCTGGCTCCAGCTCCAGCTTCAGCTCCAGCTCCAGCTCTACCTCCGGCGATGCCGAGGACCCAGCGTGCGCGCAGCGGTG
CGCGACGTCGGACCACTGGTACGCGGCGGAGGGGCTGTGCCAGCTGAGCGACAAGCAGCTGCGGCAGATGAAGGCGGTGC
AGCTGGGCTACACCATCTACGACTACTGCGCCGACGCCCAGGCCAAGGGACGCCCCGTGCCGCCGGAGTGCAGCATGCCG
CAGTACTGATCATGCATGCGCATGTCTAGTTTCACTTGATTTTTCATGGCATGTTTGATTAATGGCTTCTTGGAAGAAGT
AAATCTCTGTTGTTTTATTTTGGATTATATATTATATATGAACATGATTATTTGATTTGTTCGTGTACTCATGTTGTTCT
TC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis