Browse Element(s) Details


OsAffx.4909.1.S1_at

Description tigr:9634.m02263
TID=OsAffx.4909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2301011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22960Os.28214.2.S1_x_at11/116+13406320..13407829aquaporin TIP-type RB7-18C, putative, expressed
LOC_Os06g22970OsAffx.15567.2.S1_s_at11/116+13410096..13413132hypothetical protein
LOC_Os06g22970OsAffx.20192.1.S1_at4/116+13410096..13413132hypothetical protein
LOC_Os06g22970OsAffx.24960.1.S1_at1/116+13410096..13413132hypothetical protein
LOC_Os06g22980Os.53359.1.S1_at11/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22980Os.57510.1.S1_x_at1/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22990Os.41695.4.S1_x_at4/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.3.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.2.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g23010OsAffx.4909.1.S1_at11/116+13427643..13430617hypothetical protein
LOC_Os06g23020OsAffx.4910.1.S1_at11/116+13433832..13434940hypothetical protein
LOC_Os06g23030OsAffx.4911.1.S1_x_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23030OsAffx.4911.1.S1_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23040OsAffx.15568.1.S1_at11/116+13439853..13441507expressed protein
LOC_Os06g23040Os.49364.1.A1_x_at1/116+13439853..13441507expressed protein
LOC_Os06g23050OsAffx.15569.1.S1_at11/116+13443122..13443592AP2 domain containing protein
LOC_Os06g23060OsAffx.15570.1.S1_at11/116+13446100..13446756hypothetical protein
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4909.1.S1_at--359--6531Chr06:13428040..13428064 (25 bp)
GATTTCCATTGGTCTACTCAACTCA
LOC_Os06g23010
OsAffx.4909.1.S1_at--1133--10151Chr06:13428069..13428093 (25 bp)
TATAACTTCGTACATCTTGGCACAA
LOC_Os06g23010
OsAffx.4909.1.S1_at--1105--6771Chr06:13429661..13429685 (25 bp)
GTTAGTTCAATGATCACTGCGGTGT
LOC_Os06g23010
OsAffx.4909.1.S1_at--216--5191Chr06:13429689..13429713 (25 bp)
GCAAGGTGACCAATCTGTCTACAAG
LOC_Os06g23010
OsAffx.4909.1.S1_at--118--7031Chr06:13429756..13429780 (25 bp)
GTACATTATCTATGGCCTTGCACAA
LOC_Os06g23010
OsAffx.4909.1.S1_at--839--8431Chr06:13429769..13429793 (25 bp)
GGCCTTGCACAATGCTCATCAGAGT
LOC_Os06g23010
OsAffx.4909.1.S1_at--60--3911Chr06:13430372..13430493 (25 bp)
CTGGCAAGGTTATGTGCCCTTCAGC
LOC_Os06g23010
OsAffx.4909.1.S1_at--444--4551Chr06:13430484..13430508 (25 bp)
GCCCTTCAGCTTTAGCATCTTTTGA
LOC_Os06g23010
OsAffx.4909.1.S1_at--144--5591Chr06:13430510..13430534 (25 bp)
GAAATCACGACCAGTGCGCATGGAA
LOC_Os06g23010
OsAffx.4909.1.S1_at--460--1071Chr06:13430537..13430561 (25 bp)
AGGGTTGCACTATTTTTAGACTACG
LOC_Os06g23010
OsAffx.4909.1.S1_at--879--10431Chr06:13430552..13430576 (25 bp)
TTAGACTACGATGGTACCCTTTCGC
LOC_Os06g23010
Target Sequence 
GATTTCCATTGGTCTACTCAACTCAGGGTTATAACTTCGTACATCTTGGCACAAATCAGATTTCTAACGAGAAGATTCAG
TTCAACTATGTCAATATTCAGCAACAAGTGTTCGACAAAACTGTTAGTTCAATGATCACTGCGGTGTTAAGCAAGGTGAC
CAATCTGTCTACAAGATTTGCAAAAGGGAAGGAGTTGCTTATAGCATATAACTATAAGTACATTATCTATGGCCTTGCAC
AATGCTCATCAGAGTTGACATGTTTACAGTGTCAACTTAGTCTATACACAAAATTGGAGGTGAGTAACAGTGTAACCGAC
ACCGGTAAACGAGAAAATACTGGCAAGGTTATGTGCCCTTCAGCTTTAGCATCTTTTGAAGAAATCACGACCAGTGCGCA
TGGAAAGAGGGTTGCACTATTTTTAGACTACGATGGTACCCTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis