Browse Element(s) Details


OsAffx.5189.1.S1_at

Description tigr:9635.m00196
TID=OsAffx.5189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0287011/11hypothetical protein
LOC_Os07g027004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5189.1.S1_at--690--512Chr07:974659..974683 (25 bp)
ATCGTCAACGGCGATGACATCTGCA
LOC_Os07g02700
OsAffx.5189.1.S1_at--703--2852Chr07:974689..974713 (25 bp)
AAGTCCATCGAGCTTCTGGGAGAGC
LOC_Os07g02700
OsAffx.5189.1.S1_at--928--4831Chr07:1075479..1075503 (25 bp)
GCTACAATCGGGAGACCGGGTTCAT
LOC_Os07g02870
OsAffx.5189.1.S1_at--74--1791Chr07:1075465..1075489 (25 bp)
ACCGGGTTCATTTGGATGGTGCAGA
LOC_Os07g02870
OsAffx.5189.1.S1_at--99--5351Chr07:1075433..1075457 (25 bp)
GAAGATTGAGCACGTCTTCAAGAAG
LOC_Os07g02870
OsAffx.5189.1.S1_at--229--1611Chr07:1075320..1075344 (25 bp)
AGCTGATGCTCTGGCTCAGCATCAT
LOC_Os07g02870
OsAffx.5189.1.S1_at--713--1332Chr07:974990..975014 (25 bp)
AGAGTGGCGCCGGAATCTGCAAGAC
LOC_Os07g02700
OsAffx.5189.1.S1_at--125--4572Chr07:974996..975020 (25 bp)
GCGCCGGAATCTGCAAGACCTTTGA
LOC_Os07g02700
OsAffx.5189.1.S1_at--914--8931Chr07:1075223..1075247 (25 bp)
TGACGCCGCTGCGTTTGCACTTGGG
LOC_Os07g02870
OsAffx.5189.1.S1_at--1120--58712Chr09:9282333..9282353 (21 bp)
GAGCGAGCCGCCAATTTCATTGAAA
NONE
OsAffx.5189.1.S1_at--992--7971Chr07:1074965..1074989 (25 bp)
GGAGTAAACTGTACAGGTCCAAGAA
LOC_Os07g02870
Target Sequence 
ATCGTCAACGGCGATGACATCTGCAGGAAGAAGTCCATCGAGCTTCTGGGAGAGCTCGGCCTCCCCATGGGGCTCCTGCC
ATTGGAGGACATCGAGGAGTTCGGCTACAATCGGGAGACCGGGTTCATTTGGATGGTGCAGAGGAAGAAGAAGATTGAGC
ACGTCTTCAAGAAGATCAAGCAGAACGTGTCGTACGCCGGTGAGGTCACGGCGTTCGTCGAGAAGGGGAAGCTGAAGAAG
ATCACTGGCGTGAAGACCAAGGAGCTGATGCTCTGGCTCAGCATCATCGAGGTGTACGCCGCCGAGGCGTCGCCGGAGAA
GGTGACCTTCAAGAGTGGCGCCGGAATCTGCAAGACCTTTGACGCCGCTGCGTTTGCACTTGGGGAGCGAGCCGCCAATT
TCATTGAAAATGTAAGGAGTAAACTGTACAGGTCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis