Browse Element(s) Details


OsAffx.5275.1.S1_s_at

Description tigr:9635.m00947
TID=OsAffx.5275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0986011/11No apical meristem protein
LOC_Os07g0974011/11No apical meristem protein
LOC_Os07g0983011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5275.1.S1_s_at--1134--6213Chr07:5189497..5189521 (25 bp)
GAGGCGCCAATGTTCTTCGAGCTTC
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--738--733Chr07:5189506..5189530 (25 bp)
ATGTTCTTCGAGCTTCCAGAGAGCC
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--614--9073Chr07:5189548..5189572 (25 bp)
TGCTTTGACTTTGCCGCCATGGATG
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--812--813Chr07:5189566..5189590 (25 bp)
ATGGATGGCCAGAGCTGCACTAGCG
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--426--9033Chr07:5189581..5189605 (25 bp)
TGCACTAGCGCCGTGTCAGAGACTG
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--776--9473Chr07:5189607..5189631 (25 bp)
TCTGATCGAGGAGCTCGTTCTTCCT
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--1108--9574Chr07:5189625..5189649 (25 bp)
TCTTCCTCCTGCAGCAATGGTGAAC
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--1119--7353Chr07:5189644..5189668 (25 bp)
GTGAACCATCACGATGACTCTGTCT
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--1007--9453Chr07:5189662..5189686 (25 bp)
TCTGTCTCTGACATCGCCGATCATG
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--437--4253Chr07:5189789..5189813 (25 bp)
CCGGGTACTATGAGGCTGAGCTGAA
LOC_Os07g09740
OsAffx.5275.1.S1_s_at--627--10393Chr07:5189982..5190006 (25 bp)
TTTTGGAGTTCCAGACAGCATGGAT
LOC_Os07g09740
Target Sequence 
GAGGCGCCAATGTTCTTCGAGCTTCCAGAGAGCCTGGATGACATGGTTGGCTGCTTTGACTTTGCCGCCATGGATGGCCA
GAGCTGCACTAGCGCCGTGTCAGAGACTGCTCTGATCGAGGAGCTCGTTCTTCCTCCTGCAGCAATGGTGAACCATCACG
ATGACTCTGTCTCTGACATCGCCGATCATGGCTGCTCCGGCTCCGTTCCTCCTCCTTCAGCAGTGGTGGACCTCCCCAAT
GACTCTGATCAGAGCTGCTCCGGGTACTATGAGGCTGAGCTGAAGGTTCCACTTGAGTACGCCGCGCGCAATCCGGTCGA
CTCTCCCGCAAAAGGCGGCAATGAAGCCGAAGTTGACGCCAGCAATGGTGCAGGGTCCATGATGTCGTCGCCGGACAAGC
AGAAGGAGCACTCCTCATCGGGCGTCATGGACGTGGAGGCTATTGGTTTTGGAGTTCCAGACAGCATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5275.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis