Browse Element(s) Details


OsAffx.5316.1.S1_at

Description gb:NM_186739.1
DB_XREF= gi:34900563
TID=OsAffx.5316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0565A07.14 (P0565A07.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein
LOC_Os07g13360OsAffx.4155.1.S1_at1/117+7665062..7665406hypothetical protein
LOC_Os07g13370Os.44296.1.S1_at11/117+7666690..7667091expressed protein
LOC_Os07g13380OsAffx.5316.1.S1_at11/117+7668345..7668584hypothetical protein
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5316.1.S1_at--1032--9911Chr07:7668449..7668473 (25 bp)
TACGGCGCCATGAGCAAAAACCGCA
LOC_Os07g13380
OsAffx.5316.1.S1_at--281--3931Chr07:7668447..7668471 (25 bp)
CGGCGCCATGAGCAAAAACCGCAGC
LOC_Os07g13380
OsAffx.5316.1.S1_at--811--5071Chr07:7668427..7668451 (25 bp)
GCAGCCACGGATCTCCACAGTACAA
LOC_Os07g13380
OsAffx.5316.1.S1_at--504--7971Chr07:7668419..7668443 (25 bp)
GGATCTCCACAGTACAACCATCAGG
LOC_Os07g13380
OsAffx.5316.1.S1_at--907--9491Chr07:7668416..7668440 (25 bp)
TCTCCACAGTACAACCATCAGGGCA
LOC_Os07g13380
OsAffx.5316.1.S1_at--504--3311Chr07:7668412..7668436 (25 bp)
CACAGTACAACCATCAGGGCAGCTC
LOC_Os07g13380
OsAffx.5316.1.S1_at--868--1171Chr07:7668409..7668433 (25 bp)
AGTACAACCATCAGGGCAGCTCCGC
LOC_Os07g13380
OsAffx.5316.1.S1_at--419--411Chr07:7668400..7668424 (25 bp)
ATCAGGGCAGCTCCGCCAACCATTA
LOC_Os07g13380
OsAffx.5316.1.S1_at--1140--4371Chr07:7668385..7668409 (25 bp)
CCAACCATTACACGCGTGGCTGTGA
LOC_Os07g13380
OsAffx.5316.1.S1_at--953--1731Chr07:7668382..7668406 (25 bp)
ACCATTACACGCGTGGCTGTGAGAA
LOC_Os07g13380
OsAffx.5316.1.S1_at--110--3591Chr07:7668380..7668404 (25 bp)
CATTACACGCGTGGCTGTGAGAAGC
LOC_Os07g13380
Target Sequence 
TACGGCGCCATGAGCAAAAACCGCAGCCACGGATCTCCACAGTACAACCATCAGGGCAGCTCCGCCAACCATTACACGCG
TGGCTGTGAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis