Browse Element(s) Details


OsAffx.5591.1.S1_at

Description tigr:9635.m04135
TID=OsAffx.5591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT08090p
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4133011/11Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5591.1.S1_at--381--9171Chr07:24760630..24760654 (25 bp)
TGCCCAGATCGCATCCTTGATGATA
LOC_Os07g41330
OsAffx.5591.1.S1_at--497--10231Chr07:24760607..24760631 (25 bp)
TATTGGTGCGTCTTTTGGCATGGGT
LOC_Os07g41330
OsAffx.5591.1.S1_at--1064--2531Chr07:24760540..24760564 (25 bp)
AACTCGCCCAGTGGTGCACGGTTTG
LOC_Os07g41330
OsAffx.5591.1.S1_at--964--6311Chr07:24760493..24760517 (25 bp)
GATGAATGCGCCACGTGTTGCCGGT
LOC_Os07g41330
OsAffx.5591.1.S1_at--1043--10571Chr07:24760444..24760468 (25 bp)
TTCTCAGCTTGTGATTGTGCCCTAG
LOC_Os07g41330
OsAffx.5591.1.S1_at--378--7291Chr07:24760428..24760452 (25 bp)
GTGCCCTAGTTTCTGTGCGTCAAAA
LOC_Os07g41330
OsAffx.5591.1.S1_at--558--8011Chr07:24760403..24760427 (25 bp)
GGAGGACCCCTATAATTCCATCATT
LOC_Os07g41330
OsAffx.5591.1.S1_at--185--9591Chr07:24760355..24760379 (25 bp)
TCTTGCTGCTCGTCAGGGCTTACGT
LOC_Os07g41330
OsAffx.5591.1.S1_at--973--8291Chr07:24760339..24760363 (25 bp)
GGCTTACGTGCGGTTGCTCGTGCAT
LOC_Os07g41330
OsAffx.5591.1.S1_at--388--6731Chr07:24760300..24760324 (25 bp)
GTTCTCTTAGCCCTTGTTAGTAGTT
LOC_Os07g41330
OsAffx.5591.1.S1_at--579--591Chr07:24760198..24760222 (25 bp)
ATGCCAGAGACTTTTGATGTGCCTA
LOC_Os07g41330
Target Sequence 
TGCCCAGATCGCATCCTTGATGATATTGGTGCGTCTTTTGGCATGGGTGCAGTGGGAGGTTCTTTCTTCCACTTCGTCAA
GGGTCTCCGCAACTCGCCCAGTGGTGCACGGTTTGCTGGCGGCATGGAGGGTGTGCGGATGAATGCGCCACGTGTTGCCG
GTGGCTTTGCTGTTTGGTGTGGCCTCTTCTCAGCTTGTGATTGTGCCCTAGTTTCTGTGCGTCAAAAGGAGGACCCCTAT
AATTCCATCATTGCTGGTGCGGCCACCGGCGGCATTCTTGCTGCTCGTCAGGGCTTACGTGCGGTTGCTCGTGCATCCCT
GCAAGGCGCGGTTCTCTTAGCCCTTGTTAGTAGTTTTGGGATCATGATGAATAGATTACCTGATGCTGGATCAATGCCAG
TCAACAAGACTGAGACTTGTAAGGAGCCACAAATGCCAGAGACTTTTGATGTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis