Browse Element(s) Details


OsAffx.5593.1.S1_at

Description tigr:9635.m04141
TID=OsAffx.5593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g413909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5593.1.S1_at--634--4231NONE
CCGAGACCTACTTGCATGTTGAAAT
NONE
OsAffx.5593.1.S1_at--525--4992Chr07:24799846..24799870 (25 bp)
GCATGTTGAAATTAAGCTAGCCACT
LOC_Os07g41390
OsAffx.5593.1.S1_at--517--131Chr07:24799856..24799880 (25 bp)
ATTAAGCTAGCCACTTTGCTTGCCA
LOC_Os07g41390
OsAffx.5593.1.S1_at--400--10271Chr07:24799870..24799890 (21 bp)
TTTGCTTGCCACCAGGAAAAGAATT
LOC_Os07g41390
OsAffx.5593.1.S1_at--317--5511Chr07:24800734..24800754 (21 bp)
GAAAAGAATTTTCACCATCCGTACT
LOC_Os07g41390
OsAffx.5593.1.S1_at--558--5211Chr07:24800735..24800759 (25 bp)
GAATTTTCACCATCCGTACTAACAT
LOC_Os07g41390
OsAffx.5593.1.S1_at--758--551Chr07:24800746..24800770 (25 bp)
ATCCGTACTAACATTAAGCTTCAAA
LOC_Os07g41390
OsAffx.5593.1.S1_at--485--2811Chr07:24800778..24800802 (25 bp)
AAGATTGTACCAAATGCATGAGCGG
LOC_Os07g41390
OsAffx.5593.1.S1_at--979--8911NONE
TGAGCGGTGGATAAAATCAGCCTAC
NONE
OsAffx.5593.1.S1_at--892--2251Chr07:24802315..24802339 (25 bp)
AAATCAGCCTACATGCTCTTGACAC
LOC_Os07g41390
OsAffx.5593.1.S1_at--418--391Chr07:24802317..24802341 (25 bp)
ATCAGCCTACATGCTCTTGACACTT
LOC_Os07g41390
Target Sequence 
CCGAGACCTACTTGCATGTTGAAATTAAGCTAGCCACTTTGCTTGCCACCAGGAAAAGAATTTTCACCATCCGTACTAAC
ATTAAGCTTCAAATTCTTATAAGATTGTACCAAATGCATGAGCGGTGGATAAAATCAGCCTACATGCTCTTGACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis