Browse Element(s) Details


OsAffx.5653.1.S1_at

Description tigr:9635.m04696
TID=OsAffx.5653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4669011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5653.1.S1_at--132--10191Chr07:27902881..27902905 (25 bp)
TATTATAAGTCCAAAAGAGCTTGAC
LOC_Os07g46690
OsAffx.5653.1.S1_at--821--10311Chr07:27902879..27902903 (25 bp)
TTATAAGTCCAAAAGAGCTTGACTG
LOC_Os07g46690
OsAffx.5653.1.S1_at--925--9751Chr07:27902876..27902900 (25 bp)
TAAGTCCAAAAGAGCTTGACTGTAC
LOC_Os07g46690
OsAffx.5653.1.S1_at--559--2831Chr07:27902875..27902899 (25 bp)
AAGTCCAAAAGAGCTTGACTGTACT
LOC_Os07g46690
OsAffx.5653.1.S1_at--76--3851Chr07:27902831..27902855 (25 bp)
CTGCAGTGACGCAGTCGGATGGTTT
LOC_Os07g46690
OsAffx.5653.1.S1_at--93--9051Chr07:27902830..27902854 (25 bp)
TGCAGTGACGCAGTCGGATGGTTTT
LOC_Os07g46690
OsAffx.5653.1.S1_at--372--5011Chr07:27902829..27902853 (25 bp)
GCAGTGACGCAGTCGGATGGTTTTC
LOC_Os07g46690
OsAffx.5653.1.S1_at--596--3451Chr07:27902828..27902852 (25 bp)
CAGTGACGCAGTCGGATGGTTTTCT
LOC_Os07g46690
OsAffx.5653.1.S1_at--108--7371Chr07:27902826..27902850 (25 bp)
GTGACGCAGTCGGATGGTTTTCTTG
LOC_Os07g46690
OsAffx.5653.1.S1_at--1063--8911Chr07:27902825..27902849 (25 bp)
TGACGCAGTCGGATGGTTTTCTTGA
LOC_Os07g46690
OsAffx.5653.1.S1_at--1044--5791Chr07:27902824..27902848 (25 bp)
GACGCAGTCGGATGGTTTTCTTGAT
LOC_Os07g46690
Target Sequence 
TATTATAAGTCCAAAAGAGCTTGACTGTACTGAAAATAATGAACACTCTGCTGCAGTGACGCAGTCGGATGGTTTTCTTG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis