Browse Element(s) Details


OsAffx.6416.1.S1_at

Description tigr:9637.m02415
TID=OsAffx.6416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2753011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6416.1.S1_at--62--5691Chr09:16730000..16730024 (25 bp)
GACATTGTCGTGACGGATCGTGCGA
LOC_Os09g27530
OsAffx.6416.1.S1_at--359--3992Chr09:16730008..16730032 (25 bp)
CGTGACGGATCGTGCGAGGCCATTT
LOC_Os09g27530
OsAffx.6416.1.S1_at--177--5551Chr09:16730033..16730057 (25 bp)
GAAACTATGGATTATCTGTATCAAT
LOC_Os09g27530
OsAffx.6416.1.S1_at--618--9011Chr09:16730076..16730100 (25 bp)
TGCAAAGCCAAAGATCAAGAATATT
LOC_Os09g27530
OsAffx.6416.1.S1_at--859--2311Chr09:16730535..16730557 (23 bp)
AAAGGTGGCCAGGAGACTCCAGGCC
LOC_Os09g27530
OsAffx.6416.1.S1_at--1115--1391Chr09:16730546..16730570 (25 bp)
AGACTCCAGGCCTGTTCATGCCGAG
LOC_Os09g27530
OsAffx.6416.1.S1_at--295--3871Chr09:16730557..16730581 (25 bp)
CTGTTCATGCCGAGGCTTCCAGGAG
LOC_Os09g27530
OsAffx.6416.1.S1_at--640--6111Chr09:16730568..16730592 (25 bp)
GAGGCTTCCAGGAGGCTCCAAAATT
LOC_Os09g27530
OsAffx.6416.1.S1_at--718--8251Chr09:16730581..16730605 (25 bp)
GGCTCCAAAATTGAACCTCGGGCAC
LOC_Os09g27530
OsAffx.6416.1.S1_at--300--8311Chr09:16730598..16730622 (25 bp)
TCGGGCACCCGAAAGGGCTTCCTGG
LOC_Os09g27530
OsAffx.6416.1.S1_at--418--8291Chr09:16730613..16730637 (25 bp)
GGCTTCCTGGAGACTCGGGCCAAAT
LOC_Os09g27530
Target Sequence 
GACATTGTCGTGACGGATCGTGCGAGGCCATTTGAAACTATGGATTATCTGTATCAATCATTTGAGAAATGGAAGATGCA
AAGCCAAAGATCAAGAATATTTGATTCGTTGATAATCAAGAAGGGCATTGATCAAGGCAAAGGTGGCCAGGAGACTCCAG
GCCTGTTCATGCCGAGGCTTCCAGGAGGCTCCAAAATTGAACCTCGGGCACCCGAAAGGGCTTCCTGGAGACTCGGGCCA
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis