Browse Element(s) Details


OsAffx.6457.1.S1_at

Description tigr:9637.m02739
TID=OsAffx.6457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to UDP-glycose:flavonoid glycosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g309904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30498NANA9+18633082..18634910hypothetical protein
LOC_Os09g30502OsAffx.1353.1.S1_x_at1/119+18636537..18637971transposon protein, putative, unclassified
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6457.1.S1_at--1128--2911Chr09:18659865..18659992 (25 bp)
AAGGAGTTCGAGGTCGGTGCCCCAG
NONE
OsAffx.6457.1.S1_at--251--7791Chr09:18659850..18659874 (25 bp)
GGTGCCCCAGCTGGATGTCCTTTGC
NONE
OsAffx.6457.1.S1_at--1009--8551Chr09:18659839..18659863 (25 bp)
TGGATGTCCTTTGCCACCTTACAAC
NONE
OsAffx.6457.1.S1_at--1143--3331Chr09:18659825..18659849 (25 bp)
CACCTTACAACCGACACGTTTGTGA
NONE
OsAffx.6457.1.S1_at--743--3251Chr09:18659818..18659842 (25 bp)
CAACCGACACGTTTGTGACGCACTA
NONE
OsAffx.6457.1.S1_at--202--7971Chr09:18659770..18659794 (25 bp)
GGATCATTACAGGTATGCCCATGCT
NONE
OsAffx.6457.1.S1_at--648--9871Chr09:18659763..18659787 (25 bp)
TACAGGTATGCCCATGCTCTACTGG
NONE
OsAffx.6457.1.S1_at--1040--9531Chr09:18659746..18659770 (25 bp)
TCTACTGGCCGCTGTATGTGGAGCT
LOC_Os09g30990
OsAffx.6457.1.S1_at--7--4531Chr09:18659739..18659763 (25 bp)
GCCGCTGTATGTGGAGCTGACGATT
LOC_Os09g30990
OsAffx.6457.1.S1_at--30--1611Chr09:18659725..18659749 (25 bp)
AGCTGACGATTAACAAGGTGCTCAA
LOC_Os09g30990
OsAffx.6457.1.S1_at--237--8351Chr09:18659662..18659686 (25 bp)
GGCTGGTAGGGCTGGTGATTCCTGA
LOC_Os09g30990
Target Sequence 
AAGGAGTTCGAGGTCGGTGCCCCAGCTGGATGTCCTTTGCCACCTTACAACCGACACGTTTGTGACGCACTACGGGTGGA
ACTTGGTGCAAAAGGGGATCATTACAGGTATGCCCATGCTCTACTGGCCGCTGTATGTGGAGCTGACGATTAACAAGGTG
CTCAAGGTTGACTACATGGGCATCGACGTGGAGATGGAGGGATGGCTGGTAGGGCTGGTGATTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis