Browse Element(s) Details


OsAffx.6497.1.S1_s_at

Description tigr:9637.m03112
TID=OsAffx.6497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3685011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6497.1.S1_s_at--493--3851Chr09:21251775..21251799 (25 bp)
CTGACAGCTGCTGCATGGCGCTGGC
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--546--6691Chr09:21251618..21251642 (25 bp)
GTTCCGGCGCCACCTCAGGGTTGAC
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--1104--9631Chr09:21251604..21251628 (25 bp)
TCAGGGTTGACTCCTTCTCGTCGGG
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--810--8391Chr09:21251563..21251587 (25 bp)
GGCGCCAGAATCGAAGCCTGCTTTT
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--798--2651Chr09:21251550..21251574 (25 bp)
AAGCCTGCTTTTGACTGGAAGTTGC
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--1--5351Chr09:21251533..21251557 (25 bp)
GAAGTTGCATTGCACCGAGCAAAGT
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--878--1491Chr09:21251516..21251540 (25 bp)
AGCAAAGTGTGCTTCTTGTTTCTGC
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--781--9071Chr09:21251507..21251531 (25 bp)
TGCTTCTTGTTTCTGCACATTTTTC
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--705--3451Chr09:21251479..21251503 (25 bp)
CAGTCTCTTGCTGCTTTTTTTTTAT
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--1111--10191Chr09:21251448..21251472 (25 bp)
TATTTTTACCTTTGGAAGCTGAGAT
LOC_Os09g36850
OsAffx.6497.1.S1_s_at--564--4751Chr09:21251431..21251455 (25 bp)
GCTGAGATGTAGTTACTCTACTCTT
LOC_Os09g36850
Target Sequence 
CTGACAGCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGACGTCGACGGCGCCG
GAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGGTGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTT
CCGGCGCCACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGAC
TGGAAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTA
TTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6497.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis