Browse Element(s) Details


OsAffx.6528.1.S1_at

Description tigr:9637.m03336
TID=OsAffx.6528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3908011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6528.1.S1_at--465--7791Chr09:22433137..22433161 (25 bp)
GGTCAGAAACAAGACAATCATCGGT
LOC_Os09g39080
OsAffx.6528.1.S1_at--329--5611Chr09:22433125..22433149 (25 bp)
GACAATCATCGGTCAAGACCAGTGA
LOC_Os09g39080
OsAffx.6528.1.S1_at--69--1391Chr09:22433110..22433134 (25 bp)
AGACCAGTGAAGATACAAGCGGCAT
LOC_Os09g39080
OsAffx.6528.1.S1_at--805--331Chr09:22433098..22433122 (25 bp)
ATACAAGCGGCATCAGCGGATCTCG
LOC_Os09g39080
OsAffx.6528.1.S1_at--609--1631Chr09:22433084..22433108 (25 bp)
AGCGGATCTCGCAAAGACACACTGA
LOC_Os09g39080
OsAffx.6528.1.S1_at--969--9331Chr09:22433076..22433100 (25 bp)
TCGCAAAGACACACTGAACCAGATG
LOC_Os09g39080
OsAffx.6528.1.S1_at--249--4831Chr09:22433040..22433064 (25 bp)
GCTCATCGGCGAGCCTCAAGGAGGA
LOC_Os09g39080
OsAffx.6528.1.S1_at--1102--6171Chr09:22433020..22433044 (25 bp)
GAGGAGCTTGCATCAGCGACGGTAC
LOC_Os09g39080
OsAffx.6528.1.S1_at--1082--3371Chr09:22433007..22433031 (25 bp)
CAGCGACGGTACTCCTGAAGAGAAT
LOC_Os09g39080
OsAffx.6528.1.S1_at--965--5351Chr09:22432991..22433015 (25 bp)
GAAGAGAATTTCTCCCTGTCACTCC
LOC_Os09g39080
OsAffx.6528.1.S1_at--556--4271Chr09:22432977..22433001 (25 bp)
CCTGTCACTCCTTTCTTTCTCAAGG
LOC_Os09g39080
Target Sequence 
GGTCAGAAACAAGACAATCATCGGTCAAGACCAGTGAAGATACAAGCGGCATCAGCGGATCTCGCAAAGACACACTGAAC
CAGATGGGGAGGAGCCTGCTCATCGGCGAGCCTCAAGGAGGAGCTTGCATCAGCGACGGTACTCCTGAAGAGAATTTCTC
CCTGTCACTCCTTTCTTTCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis