Browse Element(s) Details


OsAffx.6691.1.S1_at

Description tigr:9638.m01543
TID=OsAffx.6691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1850011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative
LOC_Os10g18540Os.10731.2.A1_at1/1110+9071664..9073920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18550Os.27066.1.A1_x_at1/1110+9076666..9079862expressed protein
LOC_Os10g18560OsAffx.8279.1.S1_at2/1110+9080739..9085275retrotransposon protein, putative, unclassified
LOC_Os10g18560OsAffx.22699.1.S1_x_at1/1110+9080739..9085275retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6691.1.S1_at--519--8631Chr10:9059509..9059533 (25 bp)
TGGTGGCGCCTCTCCACCTGTGACT
LOC_Os10g18500
OsAffx.6691.1.S1_at--625--9211Chr10:9059497..9059521 (25 bp)
TCCACCTGTGACTCGTACACCAGCG
LOC_Os10g18500
OsAffx.6691.1.S1_at--639--7231Chr10:9059451..9059475 (25 bp)
GTCCCGGGCGAAGACGACGCTTGGT
LOC_Os10g18500
OsAffx.6691.1.S1_at--38--1851Chr10:9059435..9059459 (25 bp)
ACGCTTGGTGGAGGTGTCGGCACTC
LOC_Os10g18500
OsAffx.6691.1.S1_at--1084--3931Chr10:9059418..9059442 (25 bp)
CGGCACTCGGCGACAGTGTAGCCGA
LOC_Os10g18500
OsAffx.6691.1.S1_at--660--9451Chr10:9059412..9059436 (25 bp)
TCGGCGACAGTGTAGCCGACCGCCA
LOC_Os10g18500
OsAffx.6691.1.S1_at--751--7091Chr10:9059203..9059227 (25 bp)
GTCACGTCGAGTCACCGGACTCTGG
LOC_Os10g18500
OsAffx.6691.1.S1_at--457--6091Chr10:9059195..9059219 (25 bp)
GAGTCACCGGACTCTGGTGGCGTCT
LOC_Os10g18500
OsAffx.6691.1.S1_at--1158--1751Chr10:9059190..9059214 (25 bp)
ACCGGACTCTGGTGGCGTCTGAGCT
LOC_Os10g18500
OsAffx.6691.1.S1_at--216--9471Chr10:9059183..9059207 (25 bp)
TCTGGTGGCGTCTGAGCTGTTGGGC
LOC_Os10g18500
OsAffx.6691.1.S1_at--163--9391Chr10:9059103..9059127 (25 bp)
TCGATGACGACCTAGGGCCAGCGCG
LOC_Os10g18500
Target Sequence 
TGGTGGCGCCTCTCCACCTGTGACTCGTACACCAGCGGCGGCGGCGGCGGCGTCCGATGTCCCGGGCGAAGACGACGCTT
GGTGGAGGTGTCGGCACTCGGCGACAGTGTAGCCGACCGCCACGGCGGAGTAGGTCGTGGCGGCCAACATGACCGCCTCG
GCGGCGAGTGGCCCGACCAGGGAGTCGGCGTCGGCGAGGAGGAAGAAGGCGGAGACGCGGACAAGGAGAGAGGGCGTCGC
CGAGTCCCTCCACACGGAGGCCGTGCCGCAGCATTGCCGGGGCAGAGGAGAGTCGCGTCGCGTCGCGTCACGTCGAGTCA
CCGGACTCTGGTGGCGTCTGAGCTGTTGGGCGCGGCGGCGCCGGGGATGGCGGTCGTGGGGCGAGCAGGCGAGCGTGGGC
TGGCGGTCGATGACGACCTAGGGCCAGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis