Browse Element(s) Details


OsAffx.7024.1.S1_at

Description tigr:9639.m00609
TID=OsAffx.7024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0674010/11SNELIPTRC, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0016192biological_processvesicle-mediated transport
GO:0010008cellular_componentendosome membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005484molecular_functionSNAP receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7024.1.S1_at--713--3211Chr11:3287630..3287654 (25 bp)
CAAGATACTTTGCATCAGTGGAAGC
LOC_Os11g06740
OsAffx.7024.1.S1_at--150--8071Chr11:3287672..3287696 (25 bp)
GGAGAACATGTGCATCTGACCAAAG
LOC_Os11g06740
OsAffx.7024.1.S1_at--921--3231Chr11:3287706..3287730 (25 bp)
CAAGCTGCGAAAGTATCCAGTGGCA
LOC_Os11g06740
OsAffx.7024.1.S1_at--776--6011Chr11:3288014..3288038 (25 bp)
GAGAGATCCAGCTTACTATGGACTT
LOC_Os11g06740
OsAffx.7024.1.S1_at--592--6191Chr11:3288062..3288086 (25 bp)
GAGGAACTGGACTAGCACTGCTCGT
LOC_Os11g06740
OsAffx.7024.1.S1_at--740--10011NONE
TAGCACTGCTCGTAACCAGGTGGTC
NONE
OsAffx.7024.1.S1_at--683--2631Chr11:3288174..3288199 (25 bp)
AACCAGGTGGTCTCCATAAGGCGGT
LOC_Os11g06740
OsAffx.7024.1.S1_at--31--2731Chr11:3288214..3288238 (25 bp)
AAGCAAAAGAGTGCCTTTGGCCATT
LOC_Os11g06740
OsAffx.7024.1.S1_at--618--10871Chr11:3288230..3288254 (25 bp)
TTGGCCATTCAGTCAATCCTTCTGA
LOC_Os11g06740
OsAffx.7024.1.S1_at--481--6151Chr11:3288261..3288285 (25 bp)
GAGGTCCAAGCAGCACATTGCTCAA
LOC_Os11g06740
OsAffx.7024.1.S1_at--279--1531Chr11:3288320..3288576 (25 bp)
AGCAGATGCTCCTGATTAAGCGACA
LOC_Os11g06740
Target Sequence 
CAAGATACTTTGCATCAGTGGAAGCAAACACCGGAAAACACTGGAGAACATGTGCATCTGACCAAAGAAATAATAGCAAG
CTGCGAAAGTATCCAGTGGCAGGTGGTTGAACTGGAGAAAGCTATTTCAGTTGCTGAGAGAGATCCAGCTTACTATGGAC
TTAACGAGGNTGAAATAGGAAAANGGAGGAACTGGACTAGCACTGCTCGTAACCAGGTGGTCTCCATAAGGCGGTGTGTT
GAAGCTGGAAAGCAAAAGAGTGCCTTTGGCCATTCAGTCAATCCTTCTGAATTAGTGAGGTCCAAGCAGCACATTGCTCA
AGATAACGATGACTTCATTGCTTCAGAATCAGATCAGCAGATGCTCCTGATTAAGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis