Browse Element(s) Details


OsAffx.7082.1.S1_at

Description tigr:9639.m01109
TID=OsAffx.7082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1164011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11590NANA11+6446126..6446623hypothetical protein
LOC_Os11g11600OsAffx.7080.1.S1_x_at11/1111+6447896..6449204hypothetical protein
LOC_Os11g11610NANA11+6450574..6451151hypothetical protein
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7082.1.S1_at--547--5791Chr11:6468837..6468861 (25 bp)
GACGACAGGAGAACCGCGCCGAGCT
LOC_Os11g11640
OsAffx.7082.1.S1_at--1033--4071Chr11:6468856..6468910 (25 bp)
CGAGCTGGAAGTGTACATCAGAATG
LOC_Os11g11640
OsAffx.7082.1.S1_at--1162--391Chr11:6468902..6468926 (25 bp)
ATCAGAATGGTCTTCACGTTCATGG
LOC_Os11g11640
OsAffx.7082.1.S1_at--559--2971Chr11:6468907..6468931 (25 bp)
AATGGTCTTCACGTTCATGGCGTAC
LOC_Os11g11640
OsAffx.7082.1.S1_at--953--851Chr11:6468923..6468947 (25 bp)
ATGGCGTACCTTGCGTTCACGTGGT
LOC_Os11g11640
OsAffx.7082.1.S1_at--555--6751Chr11:6468937..6468961 (25 bp)
GTTCACGTGGTCGACGGTAGTCCTC
LOC_Os11g11640
OsAffx.7082.1.S1_at--475--8591Chr11:6468944..6468968 (25 bp)
TGGTCGACGGTAGTCCTCCTTGGTG
LOC_Os11g11640
OsAffx.7082.1.S1_at--680--4271Chr11:6468958..6468982 (25 bp)
CCTCCTTGGTGGCTACGTCAGCTCG
LOC_Os11g11640
OsAffx.7082.1.S1_at--262--2751Chr11:6468988..6469012 (25 bp)
AAGAAAGGATTTCGCGTGCTTGACA
LOC_Os11g11640
OsAffx.7082.1.S1_at--739--4651Chr11:6469001..6469025 (25 bp)
GCGTGCTTGACAGCAATTACTGTTG
LOC_Os11g11640
OsAffx.7082.1.S1_at--967--131Chr11:6469016..6469040 (25 bp)
ATTACTGTTGTACAGGCAACCAGGT
LOC_Os11g11640
Target Sequence 
GACGACAGGAGAACCGCGCCGAGCTGGAAGTGTACATCAGAATGGTCTTCACGTTCATGGCGTACCTTGCGTTCACGTGG
TCGACGGTAGTCCTCCTTGGTGGCTACGTCAGCTCGCTGCAAAGAAAGGATTTCGCGTGCTTGACAGCAATTACTGTTGT
ACAGGCAACCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis