Browse Element(s) Details


OsAffx.7108.1.S1_at

Description tigr:9639.m01352
TID=OsAffx.7108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1463011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14590Os.41695.15.S1_s_at11/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.3.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.5.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.4.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.2.S1_x_at4/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_x_at3/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_at2/1111+8209633..8215759hypothetical protein
LOC_Os11g14600NANA11+8218251..8219135transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14610OsAffx.20877.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610OsAffx.20877.1.S1_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610Os.45173.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14620Os.46500.2.S1_at2/1111+8231996..8232920hypothetical protein
LOC_Os11g14630OsAffx.7108.1.S1_at11/1111+8238108..8242668hypothetical protein
LOC_Os11g14640NANA11+8246820..8248165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14650Os.38764.1.S1_x_at5/1111+8248455..8257304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14660NANA11+8257832..8258492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14670NANA11+8262117..8263097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14680OsAffx.18924.2.S1_x_at7/1111+8263771..8264659hypothetical protein
LOC_Os11g14680OsAffx.19842.1.S1_at1/1111+8263771..8264659hypothetical protein
LOC_Os11g14690OsAffx.7109.1.S1_at11/1111+8266859..8267578hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7108.1.S1_at--1020--6232Chr11:8238660..8238684 (25 bp)
GATGGAAGCTGATCCCCGAAATGCA
LOC_Os11g14630
OsAffx.7108.1.S1_at--226--9491Chr11:8238632..8238656 (25 bp)
TCTCTGCATTACCTTGCTATGGACG
LOC_Os11g14630
OsAffx.7108.1.S1_at--72--5571Chr11:8238576..8238600 (25 bp)
GAAAGCAATGTTTCCAACTCTGACA
LOC_Os11g14630
OsAffx.7108.1.S1_at--28--5211Chr11:8238512..8238536 (25 bp)
GCAATTACATTCGTCGCTGCTTTCA
LOC_Os11g14630
OsAffx.7108.1.S1_at--628--6271Chr11:8238464..8238488 (25 bp)
GATGTTGGAAGCAGACACCCCATTA
LOC_Os11g14630
OsAffx.7108.1.S1_at--15--3331Chr11:8238424..8238448 (25 bp)
CACTTCAGGCTTTCTTGATCTCAGA
LOC_Os11g14630
OsAffx.7108.1.S1_at--293--791Chr11:8238389..8238413 (25 bp)
ATGTGTTCCTCATTTGTTGTCGCAT
LOC_Os11g14630
OsAffx.7108.1.S1_at--147--7951Chr11:8238339..8238363 (25 bp)
GGATCTTCGGTTCTTGCTTTATTAC
LOC_Os11g14630
OsAffx.7108.1.S1_at--425--1211Chr11:8238240..8238264 (25 bp)
AGTTTTACCTTCTCATCTTCAATGG
LOC_Os11g14630
OsAffx.7108.1.S1_at--822--4631Chr11:8238206..8238230 (25 bp)
GCGATTTGTTTTGTGCCAGCTTTAC
LOC_Os11g14630
OsAffx.7108.1.S1_at--426--7411Chr11:8238157..8238181 (25 bp)
GTGATTGGCCTATCTTGAAGCTCAA
LOC_Os11g14630
Target Sequence 
GATGGAAGCTGATCCCCGAAATGCAACCTCTCTGCATTACCTTGCTATGGACGCAAAGATAAAAGTAACTAATGATTCGA
GGACGAAAGCAATGTTTCCAACTCTGACAAACACAAGGAGCACTTCATTAGTGGCTATCATCATAGCGGCAATTACATTC
GTCGCTGCTTTCACCTTACCTGGAGGATACAATACTGATGTTGGAAGCAGACACCCCATTATGGCAAAAAAGTTTTCACT
TCAGGCTTTCTTGATCTCAGATACCTTAGCAATGTGTTCCTCATTTGTTGTCGCATTCATATGCATCATAGCAAAGTGGG
AGGATCTTCGGTTCTTGCTTTATTACAGGTCTATTACTATGAAGCTAATGTGGTTTTCATACATGGCAACCATTATAGCA
TTTGCAACTGGTTTGTACACAGTTTTACCTTCTCATCTTCAATGGTTGGCTATAGCGATTTGTTTTGTGCCAGCTTTACT
GCCCATCCTTACCAAGCTGCTAGGTGATTGGCCTATCTTGAAGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis