Browse Element(s) Details


OsAffx.7243.1.S1_s_at

Description tigr:9639.m02641
TID=OsAffx.7243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7243.1.S1_s_at--587--1071Chr11:16436758..16436782 (25 bp)
AGGGCACATCCCAAGGTTTGGAGAT
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--1047--2771Chr11:16436730..16436754 (25 bp)
AAGAGCAGTGATGGTGGCACCCCTT
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--310--10531Chr11:16436697..16436721 (25 bp)
TTCTTTGACGATGCCCGCAAGAGGA
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--346--291Chr11:16436603..16436627 (25 bp)
ATAGAACACCTCCTCACGGAGCTGG
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--112--9551Chr11:16436577..16436601 (25 bp)
TCTTCCACTCCCCAAAGAAACAAGG
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--182--2751Chr11:16436563..16436587 (25 bp)
AAGAAACAAGGATCCCGCATCTCGT
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--501--7251Chr11:16436543..16436564 (22 bp)
GTCCTCGCAGCCAAAGCGCGGTCGG
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--901--5011Chr11:16436220..16436244 (25 bp)
GCAGTACACGCTTATGTTCGACCAG
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--23--4891Chr11:16436211..16436235 (25 bp)
GCTTATGTTCGACCAGATTAGGGAT
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--647--8051Chr11:16436182..16436206 (25 bp)
GGAGAGGCAGTGCTCCTTCAACGCC
LOC_Os11g29210
OsAffx.7243.1.S1_s_at--241--9211Chr11:16436130..16436154 (25 bp)
TCCAACTCGGTACAATCAGCACAAT
LOC_Os11g29210
Target Sequence 
AGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACCCCTTACACCGTCTTCTTTGACGATGCCCGCA
AGAGGAAGAATGCAGGTGGTGTGGTGCCTCCTCCTTCTCTGGCTCGTGGCGACTCCGCACCTCCTCCTTCAGGCCATAGA
ACACCTCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTCGCAGCCAAAGCGCGGT
CGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGAGGGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACA
CGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCC
ACTCCAACTCGGTACAATCAGCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7243.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis