Browse Element(s) Details


OsAffx.727.1.S1_x_at

Description gb:NM_193310.1
DB_XREF= gi:34913703
GEN=OSJNBa0062A24.23
TID=OsAffx.727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0062A24.23 (OSJNBa0062A24.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g400102/11retrotransposon protein, putative, unclassified
LOC_Os06g306701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g314501/11hypothetical protein
LOC_Os08g406501/11Protein kinase domain containing protein
LOC_Os05g116901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g401001/11hypothetical protein
LOC_Os04g261801/11hypothetical protein
LOC_Os06g198301/11hypothetical protein
LOC_Os04g288001/11hypothetical protein
LOC_Os12g174301/11NB-ARC domain containing protein, expressed
LOC_Os05g429901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.727.1.S1_x_at--550--1131NONE
AGTCCAAATTTGCTACACATCGGCG
NONE
OsAffx.727.1.S1_x_at--1049--2231Chr01:20364853..20365190 (25 bp)
AAATTTGCTACACATCGGCGGTCAG
NONE
OsAffx.727.1.S1_x_at--482--10271Chr01:20365172..20365193 (22 bp)
TTTGCTACACATCGGCGGTCAGACT
NONE
OsAffx.727.1.S1_x_at--628--7111Chr01:20365186..20365210 (25 bp)
GTCAGACTGGCGGATAATCTGTGGT
NONE
OsAffx.727.1.S1_x_at--347--5731Chr01:20365190..20365214 (25 bp)
GACTGGCGGATAATCTGTGGTCAGA
NONE
OsAffx.727.1.S1_x_at--755--6451Chr01:20365198..20365222 (25 bp)
GATAATCTGTGGTCAGACCGGCGTT
NONE
OsAffx.727.1.S1_x_at--927--1371Chr01:20365212..20365236 (25 bp)
AGACCGGCGTTGGAAATAGGCGACA
NONE
OsAffx.727.1.S1_x_at--786--272Chr12:3158714..3158734 (21 bp)
ATAGGCGACAGGAGCTGATCTCGGC
NONE
OsAffx.727.1.S1_x_at--449--5731Chr01:20365257..20365281 (25 bp)
GACTGGAGATCCAATCTCGGTCGGA
NONE
OsAffx.727.1.S1_x_at--5--82729Chr12:14086527..14086551 (25 bp)
GGCAGGACAACTTCGGTCAGACCGC
NONE
OsAffx.727.1.S1_x_at--168--22185Chr12:14086533..14086557 (25 bp)
ACAACTTCGGTCAGACCGCGATCCG
NONE
Target Sequence 
AGTCCAAATTTGCTACACATCGGCGGTCAGACTGGCGGATAATCTGTGGTCAGACCGGCGTTGGAAATAGGCGACAGGAG
CTGATCTCGGCGGTCAGACTGGAGATCCAATCTCGGTCGGACCGACGGCAACCAGGCGGTCAGACCGGCAGGACAACTTC
GGTCAGACCGCGATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.727.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis