Browse Element(s) Details


OsAffx.7276.1.S1_at

Description tigr:9639.m02959
TID=OsAffx.7276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3254011/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7276.1.S1_at--172--4351Chr11:18706590..18706613 (24 bp)
CCAGACGGTGCTGCCCGAAAGCGAG
LOC_Os11g32540
OsAffx.7276.1.S1_at--680--1571Chr11:18706549..18706573 (25 bp)
AGCTCAACGCGTCCGGCTTGGTGTT
LOC_Os11g32540
OsAffx.7276.1.S1_at--1134--8611Chr11:18706531..18706555 (25 bp)
TGGTGTTCCGCCCTTCGTTCGAGCT
LOC_Os11g32540
OsAffx.7276.1.S1_at--236--2211Chr11:18706489..18706513 (25 bp)
ACAACATCGAGCAGTGCTTGGCCGA
LOC_Os11g32540
OsAffx.7276.1.S1_at--682--1071Chr11:18706465..18706489 (25 bp)
AGGGAGTCGGCAAGCATGTCGCCCA
LOC_Os11g32540
OsAffx.7276.1.S1_at--375--9451Chr11:18706459..18706483 (25 bp)
TCGGCAAGCATGTCGCCCATGGCGG
LOC_Os11g32540
OsAffx.7276.1.S1_at--830--5391Chr11:18706350..18706374 (25 bp)
GAAGCTGGATGCATCCCGGCATGTC
LOC_Os11g32540
OsAffx.7276.1.S1_at--386--551Chr11:18706338..18706362 (25 bp)
ATCCCGGCATGTCCTGAGCGAGTAC
LOC_Os11g32540
OsAffx.7276.1.S1_at--407--751Chr11:18706307..18706331 (25 bp)
ATGTCTGGCGCGTCGATTATCTTCG
LOC_Os11g32540
OsAffx.7276.1.S1_at--327--4491Chr11:18706300..18706324 (25 bp)
GCGCGTCGATTATCTTCGTCCTCGA
LOC_Os11g32540
OsAffx.7276.1.S1_at--896--2091Chr11:18706255..18706279 (25 bp)
ACATGCCGTCGGGAGGGCTAGGCGT
LOC_Os11g32540
Target Sequence 
CCAGACGGTGCTGCCCGAAAGCGAGGGCGGCGCCGAAGGGCAGCTCAACGCGTCCGGCTTGGTGTTCCGCCCTTCGTTCG
AGCTCCCGGCGATGGTGCGCGACAACATCGAGCAGTGCTTGGCCGAGGGAGTCGGCAAGCATGTCGCCCATGGCGGCTGG
AACGACCTCTTCTGGGCGGTGCACCCCGGCGGGAGGAAGATCCTGGACGTCGTGGAGGACCGGCTCGCGCTGGCGCCGGG
GAAGCTGGATGCATCCCGGCATGTCCTGAGCGAGTACGGGAACATGTCTGGCGCGTCGATTATCTTCGTCCTCGACGAGC
TCCGACGACGGGGCGACATGCCGTCGGGAGGGCTAGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis