Browse Element(s) Details


OsAffx.7300.1.S1_x_at

Description tigr:9639.m03175
TID=OsAffx.7300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BSD domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3532011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7300.1.S1_x_at--1049--2751Chr11:20209186..20209210 (25 bp)
AAGACATGGTAGCTGCTTCTTCCAG
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--111--9771Chr11:20209149..20209173 (25 bp)
TAATGTGCCTTCTCCTGTAGAGGTT
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--812--2871Chr11:20209092..20209116 (25 bp)
AAGGGCCACATCCTTCAGCAACGTC
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--968--3251Chr11:20209074..20209098 (25 bp)
CAACGTCAACTATGGCGCGCCTCAA
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--790--4551Chr11:20209060..20209084 (25 bp)
GCGCGCCTCAACCAGTAATTCTGGA
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--8--3011Chr11:20209013..20209037 (25 bp)
AATGACTCTGGAGGTCTTCGCGCAG
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--725--6291Chr11:20208989..20209013 (25 bp)
GATGACATCACCAGCAGTGTACCTG
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--1101--7431Chr11:20208973..20208997 (25 bp)
GTGTACCTGTACAACTTGTGCCAGT
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--544--5571Chr11:20208945..20208969 (25 bp)
GAAAGATGCTACTGAGTTCTCACAA
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--766--7971Chr11:20208904..20208928 (25 bp)
GGATCCAAGATTTCACTGCACAAGA
LOC_Os11g35320
OsAffx.7300.1.S1_x_at--35--5651Chr11:20208814..20208838 (25 bp)
GACAGAAACAGCCATCGACCACTAA
LOC_Os11g35320
Target Sequence 
AAGACATGGTAGCTGCTTCTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGAAT
GAAGATGATTCTGCAAGGGCCACATCCTTCAGCAACGTCAACTATGGCGCGCCTCAACCAGTAATTCTGGAAATGCAATC
AGATGATACACTCAATGACTCTGGAGGTCTTCGCGCAGATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTAT
TGAAAGATGCTACTGAGTTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCAAAT
GAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAGAAACAGCCATCGACCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7300.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis