Browse Element(s) Details


OsAffx.7301.1.S1_at

Description tigr:9639.m03185
TID=OsAffx.7301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Cf2Cf5 disease resistance protein homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3541011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35440OsAffx.7302.1.S1_at9/1111+20263736..20265310hypothetical protein
LOC_Os11g35450Os.49950.1.S1_at11/1111+20268771..20271968Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7301.1.S1_at--231--6431Chr11:20247982..20248006 (25 bp)
GATCATTCGGTCGTTGGAATCGCTT
LOC_Os11g35410
OsAffx.7301.1.S1_at--608--8211Chr11:20247967..20247991 (25 bp)
GGAATCGCTTGACCTATCGAGAAAC
LOC_Os11g35410
OsAffx.7301.1.S1_at--59--531Chr11:20247952..20247976 (25 bp)
ATCGAGAAACATGCTCTCCGGAGAA
LOC_Os11g35410
OsAffx.7301.1.S1_at--266--2711Chr11:20247895..20247919 (25 bp)
AAGCTTCTTGGATTTGGCTGACAAC
LOC_Os11g35410
OsAffx.7301.1.S1_at--279--2731Chr11:20247859..20247883 (25 bp)
AAGAATACCGTCAGGATCGCAACTT
LOC_Os11g35410
OsAffx.7301.1.S1_at--860--4111Chr11:20247842..20247866 (25 bp)
CGCAACTTGACACCCTCTATGAGGA
LOC_Os11g35410
OsAffx.7301.1.S1_at--42--751Chr11:20247807..20247831 (25 bp)
ATGTACGGTGGCAATAGCGGCCTCT
LOC_Os11g35410
OsAffx.7301.1.S1_at--315--10011Chr11:20247719..20247743 (25 bp)
TAGCTGAGCGTGACTTTGATCCAAT
LOC_Os11g35410
OsAffx.7301.1.S1_at--1015--10611Chr11:20247660..20247684 (25 bp)
TTCGGTCTATGGGTTGTGTTCTGCG
LOC_Os11g35410
OsAffx.7301.1.S1_at--53--7431Chr11:20247645..20247669 (25 bp)
GTGTTCTGCGTCCTATTGTTCAAGA
LOC_Os11g35410
OsAffx.7301.1.S1_at--435--6211Chr11:20247613..20247637 (25 bp)
GAGGCTTTGTTATTTCTGCTTCATT
LOC_Os11g35410
Target Sequence 
GATCATTCGGTCGTTGGAATCGCTTGACCTATCGAGAAACATGCTCTCCGGAGAAATCCCTTCAAGCTTGTCAAATCTGA
CATATCTAAGCTTCTTGGATTTGGCTGACAACAATCTTACAGGAAGAATACCGTCAGGATCGCAACTTGACACCCTCTAT
GAGGAGCATCCATATATGTACGGTGGCAATAGCGGCCTCTGCGGGCCGCCTCTTCGAGAAAATTGTTCAGCAAATGATGC
ATCAAAGCTAGATGGACAGGAAATAGCTGAGCGTGACTTTGATCCAATGTCCTTTGGTTTTGGACACTGTTTGGGGTTCG
TGTTCGGTCTATGGGTTGTGTTCTGCGTCCTATTGTTCAAGAAATCTTGGAGGCTTTGTTATTTCTGCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis