Browse Element(s) Details


OsAffx.7611.1.S1_at

Description tigr:9640.m01611
TID=OsAffx.7611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1648010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16430OsAffx.7916.1.S1_at3/1112+9405236..9409253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16440NANA12+9411970..9413508retrotransposon protein, putative, unclassified
LOC_Os12g16450OsAffx.828.1.S1_x_at4/1112+9415583..9421009retrotransposon protein, putative, unclassified
LOC_Os12g16460NANA12+9421649..9423296retrotransposon protein, putative, unclassified
LOC_Os12g16470NANA12+9432404..9432751hypothetical protein
LOC_Os12g16480OsAffx.7611.1.S1_at10/1112+9433343..9435606hypothetical protein
LOC_Os12g16490OsAffx.30515.2.S1_x_at10/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.1.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.4.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7611.1.S1_at--853--8251Chr12:9434938..9434962 (25 bp)
GGCAGAGGCCTCTACATAGGAAATA
LOC_Os12g16480
OsAffx.7611.1.S1_at--779--3111Chr12:9434917..9434941 (25 bp)
AATATCAACTTCCATCACAGGTCGC
LOC_Os12g16480
OsAffx.7611.1.S1_at--230--391Chr12:9434904..9434928 (25 bp)
ATCACAGGTCGCTACGTCATGGGAA
LOC_Os12g16480
OsAffx.7611.1.S1_at--1119--11Chr12:9433975..9433999 (25 bp)
ATTGTGTCAGAATTCAGAGACCGAA
LOC_Os12g16480
OsAffx.7611.1.S1_at--608--3831Chr12:9433948..9433972 (25 bp)
CTGAGGGTTCTATCTTATAGTTTTC
LOC_Os12g16480
OsAffx.7611.1.S1_at--623--10191NONE
TATAGTTTTCTGTCTGGGTCTGCCA
NONE
OsAffx.7611.1.S1_at--461--7171Chr12:9433493..9433517 (25 bp)
GTCTGCCACTGATTGGGACGAGAGC
LOC_Os12g16480
OsAffx.7611.1.S1_at--931--4311Chr12:9433452..9433476 (25 bp)
CCTTCGTGCAGGTCAGAAGCAGTGT
LOC_Os12g16480
OsAffx.7611.1.S1_at--750--4551Chr12:9433423..9433447 (25 bp)
GCGCCTCGGCGGCAGTTCAATGCCT
LOC_Os12g16480
OsAffx.7611.1.S1_at--961--6731Chr12:9433409..9433433 (25 bp)
GTTCAATGCCTGCTGGGACTGGCAT
LOC_Os12g16480
OsAffx.7611.1.S1_at--574--591Chr12:9433377..9433401 (25 bp)
ATGCCGATGACAGTGGGTGCGTCCC
LOC_Os12g16480
Target Sequence 
GGCAGAGGCCTCTACATAGGAAATATCAACTTCCATCACAGGTCGCTACGTCATGGGAAATGGGCTGTAACTTATGAGGA
GTGGCCGGAGGAGGTCTATCCACCCTATGCAAATGGTCCTGGATATGTTATATCTTCTGATATTGCTGGTGCCATTGTGT
CAGAATTCAGAGACCGAAAACTGAGGGTTCTATCTTATAGTTTTCTGTCTGGGTCTGCCACTGATTGGGACGAGAGCGAC
GGGAGGCGGGCAGCCTTCGTGCAGGTCAGAAGCAGTGTAGTAGCGCCTCGGCGGCAGTTCAATGCCTGCTGGGACTGGCA
TCTTCCCGATGCCGATGACAGTGGGTGCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis