Browse Element(s) Details


OsAffx.7656.3.A1_x_at

Description tigr:9640.m02105
TID=OsAffx.7656.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22230OsAffx.20244.1.S1_at1/1112+12526504..12529236retrotransposon protein, putative, unclassified
LOC_Os12g22240OsAffx.22896.1.S1_x_at1/1112+12530151..12532459retrotransposon protein, putative, unclassified
LOC_Os12g22250NANA12+12533625..12540291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22260OsAffx.29731.3.S1_at1/1112+12543726..12547378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22270OsAffx.7656.3.A1_x_at11/1112+12553636..12554085hypothetical protein
LOC_Os12g22270OsAffx.7656.2.S1_x_at1/1112+12553636..12554085hypothetical protein
LOC_Os12g22284Os.14657.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.49307.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.47130.4.A1_x_at2/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.37083.2.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_x_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.53962.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7656.3.A1_x_at--948--9411Chr12:12553973..12553997 (25 bp)
TCGTGCTCGCCTTCGGGGTGCTCTC
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--481--9411Chr12:12553889..12553913 (25 bp)
TCGTCGGAGCCTGTGCACTCTGCTG
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--48--9451Chr12:12553886..12553910 (25 bp)
TCGGAGCCTGTGCACTCTGCTGCTT
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--666--8091Chr12:12553884..12553908 (25 bp)
GGAGCCTGTGCACTCTGCTGCTTCC
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--876--1671Chr12:12553882..12553906 (25 bp)
AGCCTGTGCACTCTGCTGCTTCCTG
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--1017--10571Chr12:12553851..12553875 (25 bp)
TTCTCCAACAGCTACCGCGACGGCA
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--261--8412Chr12:25563138..25563162 (25 bp)
GGCGCCGTGCGCTACGACTTCGTCA
NONE
OsAffx.7656.3.A1_x_at--1148--9331Chr12:12553761..12553785 (25 bp)
TCGCTGCCGCCGAGGGACAACAGGT
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--1085--5612Chr12:25563060..25563084 (25 bp)
GACAACAGGTACAGGCTCGGCGCGC
NONE
OsAffx.7656.3.A1_x_at--529--3331Chr12:12553710..12553734 (25 bp)
CACGGCGCACTGTCGTTCGCGGTGT
LOC_Os12g22270
OsAffx.7656.3.A1_x_at--8--7531Chr12:12553668..12553692 (25 bp)
GTGGACCACAACGTGGTGGCGCACT
LOC_Os12g22270
Target Sequence 
TCGTGCTCGCCTTCGGGGTGCTCTCGCCGTCCTCTACCGCGGACGGCAGCTGCACGGCCGCCAACCGCGCGCTCACCGCC
TGCCTCGTCGGAGCCTGTGCACTCTGCTGCTTCCTGCTCTGCTTCTCCAACAGCTACCGCGACGGCACGGGCGCCGTGCG
CTACGACTTCGTCACGCCCAGCGGCCGCCTCCGCCTCATCGACGGCTCCGGCTCGCTGCCGCCGAGGGACAACAGGTACA
GGCTCGGCGCGCGCGACGTGCTGCACGGCGCACTGTCGTTCGCGGTGTTCCTGGCCGTGGCCATGGTGGACCACAACGTG
GTGGCGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7656.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis