Browse Element(s) Details


OsAffx.7657.1.S1_at

Description tigr:9640.m02125
TID=OsAffx.7657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2246011/11hypothetical protein
LOC_Os07g184401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g267001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22400Os.46436.1.S1_at2/1112+12646039..12649248hypothetical protein
LOC_Os12g22400OsAffx.17213.1.S1_x_at1/1112+12646039..12649248hypothetical protein
LOC_Os12g22400OsAffx.12184.1.S1_x_at1/1112+12646039..12649248hypothetical protein
LOC_Os12g22410NANA12+12650001..12651266retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.5.S1_x_at6/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.4.S1_x_at2/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.2.S1_at1/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.4.S1_at1/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.5.S1_x_at6/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.4.S1_x_at2/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.4.S1_at1/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22440OsAffx.22699.1.S1_x_at1/1112+12667776..12669335retrotransposon protein, putative, unclassified
LOC_Os12g22450OsAffx.19776.1.S1_at10/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8469.1.S1_x_at2/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8847.1.S1_x_at1/1112+12670248..12672162hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_x_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22470Os.27639.1.S1_x_at3/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.28705.1.S1_at2/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.1746.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470Os.29043.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22480NANA12+12682522..12683448transposon protein, putative, unclassified
LOC_Os12g22490Os.10626.4.A1_s_at11/1112+12692005..12692436hypothetical protein
LOC_Os12g22490Os.40531.1.A1_x_at3/1112+12692005..12692436hypothetical protein
LOC_Os12g22500Os.51370.1.S1_x_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.51370.1.S1_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.52249.2.S1_x_at1/1112+12694169..12695021expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7657.1.S1_at--304--6291Chr12:12674340..12674364 (25 bp)
GATGATTCGGGCGATAAAGGCATCG
LOC_Os12g22460
OsAffx.7657.1.S1_at--259--4051Chr12:12674329..12674353 (25 bp)
CGATAAAGGCATCGCAGGTGGCTCA
LOC_Os12g22460
OsAffx.7657.1.S1_at--632--331Chr12:12674327..12674351 (25 bp)
ATAAAGGCATCGCAGGTGGCTCAGG
LOC_Os12g22460
OsAffx.7657.1.S1_at--315--8212Chr04:15566453..15566484 (24 bp)
GGCAATGGATTACAACCACAATTTA
LOC_Os04g26700
OsAffx.7657.1.S1_at--586--811Chr12:12674246..12674270 (25 bp)
ATGGATTACAACCACAATTTAACAA
LOC_Os12g22460
OsAffx.7657.1.S1_at--718--10772Chr10:9532183..9532560 (25 bp)
TTGATCAACCAATCAAGAATACTGG
NONE
OsAffx.7657.1.S1_at--785--3051Chr12:12674175..12674199 (25 bp)
CAATCAAGAATACTGGTTAATACCT
LOC_Os12g22460
OsAffx.7657.1.S1_at--81--3011Chr12:12674157..12674181 (25 bp)
AATACCTTAACAAATGTCACGCCCG
LOC_Os12g22460
OsAffx.7657.1.S1_at--990--9911Chr12:12674155..12674179 (25 bp)
TACCTTAACAAATGTCACGCCCGAA
LOC_Os12g22460
OsAffx.7657.1.S1_at--3--3551Chr12:12674152..12674176 (25 bp)
CTTAACAAATGTCACGCCCGAAAAT
LOC_Os12g22460
OsAffx.7657.1.S1_at--234--9815Chr12:9236517..9236879 (25 bp)
TAACAAATGTCACGCCCGAAAATTC
NONE
Target Sequence 
GATGATTCGGGCGATAAAGGCATCGCAGGTGGCTCAGGCGACAAAGGTGACGGTTTTCAGGAAGGGGTGGTTCAGGACCT
TGGTCCAGATGGCAATGGATTACAACCACAATTTAACAACTTCCAAGATCAGATTGACTACGCAGTGCAACATGCTTTGA
TCAACCAATCAAGAATACTGGTTAATACCTTAACAAATGTCACGCCCGAAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis