Browse Element(s) Details


OsAffx.8061.1.S1_at

Description gb:NM_196773.1
DB_XREF= gi:37534905
TID=OsAffx.8061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mutator protein (OSJNBa0068N06.23), mRNA.
PROD=putative mutator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3135010/11transposon protein, putative, Mutator sub-class
LOC_Os08g359709/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8061.1.S1_at--969--272Chr10:16118142..16118166 (25 bp)
ATAGGTTCACTGTGCAGCTGGACAA
LOC_Os10g31350
OsAffx.8061.1.S1_at--516--6072Chr10:16118258..16118282 (25 bp)
GAGTTCACTGCTGATTGCTACAAAG
LOC_Os10g31350
OsAffx.8061.1.S1_at--797--9792Chr10:16118305..16118329 (25 bp)
TAAGCATTGCCTACTACCAGTGGAG
LOC_Os10g31350
OsAffx.8061.1.S1_at--961--712Chr10:16118352..16118376 (25 bp)
ATGATAGGGAGCCACTGACTGCACC
LOC_Os10g31350
OsAffx.8061.1.S1_at--343--1292Chr10:16118388..16118412 (25 bp)
AGATGCCAGGCAGGCCCAGAACTGA
LOC_Os10g31350
OsAffx.8061.1.S1_at--836--9612Chr10:16118428..16118452 (25 bp)
TCATGAGCCAGCTAAGCCTTCTAAG
LOC_Os10g31350
OsAffx.8061.1.S1_at--29--5691Chr10:16118485..16118509 (25 bp)
GACTTGCAAGCAGGTTGGCCACAAC
LOC_Os10g31350
OsAffx.8061.1.S1_at--700--3032Chr10:16118531..16118555 (25 bp)
AATCCAGCTCAAACTGCAGGTGGCA
LOC_Os10g31350
OsAffx.8061.1.S1_at--482--7532Chr10:16118550..16118574 (25 bp)
GTGGCAGTTCACAGCAGGTTGCAAC
LOC_Os10g31350
OsAffx.8061.1.S1_at--709--932Chr10:16118633..16118657 (25 bp)
AGGAAGGCAACTGGCACCTTGACTA
LOC_Os10g31350
OsAffx.8061.1.S1_at--192--2311NONE
AAAGGCACAAATGGAGCCCCTCCAA
NONE
Target Sequence 
ATAGGTTCACTGTGCAGCTGGACAAGAAGGAGTGTTCTTGCAGAACTAACACACTGGATGAGTTCACTGCTGATTGCTAC
AAAGTGGATGCTTTCAAGAGCACATATAAGCATTGCCTACTACCAGTGGAGGGCATGAATGCATGGCCAGAAGATGATAG
GGAGCCACTGACTGCACCTGGGTATATAAAGATGCCAGGCAGGCCCAGAACTGAAAGAAGGAGAGAGGCTCATGAGCCAG
CTAAGCCTTCTAAGGCATCAAAATTTGGCACCAAGGTCAGATGCAGGACTTGCAAGCAGGTTGGCCACAACAAATCAAGC
TGTCACAAACACAATCCAGCTCAAACTGCAGGTGGCAGTTCACAGCAGGTTGCAACACCCAGCCACAATCTTGTACTGTC
CAACACCCCCCAGAGTTGTGCACAAAGTAGAAAAAGGAAGGCAACTGGCACCTTGACTACCACTACTTCAGCCTCTCAGT
CAAAGGCAACCAAGCCGACAAAAAAAGGCACAAATGGAGCCCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis