Browse Element(s) Details


OsAffx.8215.1.S1_at

Description gb:NM_196076.1
DB_XREF= gi:37533511
TID=OsAffx.8215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBb0089F16.21), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2216011/11retrotransposon protein, putative, unclassified
LOC_Os04g175741/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g227001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g193501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g086601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein
LOC_Os10g22184NANA10+11137941..11138635hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8215.1.S1_at--236--9032Chr06:11006160..11006182 (23 bp)
TGCACAATGACAAAGAAGCCCCTGT
LOC_Os06g19350
OsAffx.8215.1.S1_at--237--2752Chr10:11114587..11114611 (25 bp)
AAGAAGCCCCTGTCATCATAAGTGA
LOC_Os10g22160
OsAffx.8215.1.S1_at--790--311Chr10:11114570..11114594 (25 bp)
ATAAGTGACAAGCTTTCTAAAGACG
LOC_Os10g22160
OsAffx.8215.1.S1_at--264--9771Chr10:11114469..11114493 (25 bp)
TAATCCCGCGCTTTGTATTCATCGT
LOC_Os10g22160
OsAffx.8215.1.S1_at--163--4891Chr10:11114460..11114484 (25 bp)
GCTTTGTATTCATCGTATCCCTATT
LOC_Os10g22160
OsAffx.8215.1.S1_at--728--9611Chr10:11114451..11114475 (25 bp)
TCATCGTATCCCTATTGATCCTGAG
LOC_Os10g22160
OsAffx.8215.1.S1_at--314--6272Chr12:4393547..4393571 (25 bp)
GATGTCCTAAAACTCCTGCATGCCG
LOC_Os12g08660
OsAffx.8215.1.S1_at--218--2431Chr10:11114355..11114379 (25 bp)
AAAACTCCTGCATGCCGAGATTATT
LOC_Os10g22160
OsAffx.8215.1.S1_at--46--4513Chr04:9580668..9580687 (20 bp)
GCCGAGATTATTTATCCCGTACCAT
LOC_Os04g17574
OsAffx.8215.1.S1_at--665--10351Chr10:11114332..11114356 (25 bp)
TTTATCCCGTACCATATAGTGTGTG
LOC_Os10g22160
OsAffx.8215.1.S1_at--4--291Chr10:11114317..11114341 (25 bp)
ATAGTGTGTGGGTTAGCCCGGTCCA
LOC_Os10g22160
Target Sequence 
TGCACAATGACAAAGAAGCCCCTGTCATCATAAGTGACAAGCTTTCTAAAGACGAGACTCAACGTCTTCTGTTTGTGTTA
GAAAAGCATCGCGCTGTTCTTGGCTATTCCCTTCAAGATCTCAGAGGGATTAATCCCGCGCTTTGTATTCATCGTATCCC
TATTGATCCTGAGAGTACTCCCTCTAGGGAACCTCAACGACGGCTCAATAATGCGATGCGAAAAGTTGTAAAGAAAGATG
TCCTAAAACTCCTGCATGCCGAGATTATTTATCCCGTACCATATAGTGTGTGGGTTAGCCCGGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis