Browse Element(s) Details


OsAffx.8391.1.S1_at

Description gb:NM_195301.1
DB_XREF= gi:37531961
TID=OsAffx.8391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0040E17.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g115409/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein
LOC_Os10g11610OsAffx.18226.1.S1_at7/1110+6178786..6179394hypothetical protein
LOC_Os10g11620OsAffx.30391.1.S1_at11/1110+6179930..6184650hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8391.1.S1_at--947--9192Chr10:6156514..6156538 (25 bp)
TGCCATGCGACAAAAATGAACCTCT
LOC_Os10g11540
OsAffx.8391.1.S1_at--375--2272Chr10:6156527..6156551 (25 bp)
AAATGAACCTCTGACCAATCATGTG
LOC_Os10g11540
OsAffx.8391.1.S1_at--470--671Chr10:6156529..6156553 (25 bp)
ATGAACCTCTGACCAATCATGTGCG
LOC_Os10g11540
OsAffx.8391.1.S1_at--1140--8971Chr10:6156530..6156554 (25 bp)
TGAACCTCTGACCAATCATGTGCGA
LOC_Os10g11540
OsAffx.8391.1.S1_at--922--5431Chr10:6156531..6156555 (25 bp)
GAACCTCTGACCAATCATGTGCGAG
LOC_Os10g11540
OsAffx.8391.1.S1_at--674--1751Chr10:6156533..6156557 (25 bp)
ACCTCTGACCAATCATGTGCGAGTA
LOC_Os10g11540
OsAffx.8391.1.S1_at--644--4291Chr10:6156534..6156558 (25 bp)
CCTCTGACCAATCATGTGCGAGTAC
LOC_Os10g11540
OsAffx.8391.1.S1_at--1129--4051Chr10:6156552..6156576 (25 bp)
CGAGTACAAGGATTGGACGGACCAC
LOC_Os10g11540
OsAffx.8391.1.S1_at--358--2911Chr10:6156559..6156593 (25 bp)
AAGGATTGGACGGACCACAAACTGA
LOC_Os10g11540
OsAffx.8391.1.S1_at--195--6611NONE
GATTGGACGGACCACAAACTGAGCC
NONE
OsAffx.8391.1.S1_at--194--10831NONE
TTGGACGGACCACAAACTGAGCCAC
NONE
Target Sequence 
TGCCATGCGACAAAAATGAACCTCTGACCAATCATGTGCGAGTACAAGGATTGGACGGACCACAAACTGAGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis