Browse Element(s) Details


OsAffx.8934.1.S1_x_at

Description gb:NM_193670.1
DB_XREF= gi:34914423
GEN=P0516D04.12
TID=OsAffx.8934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.12 (P0516D04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g027301/11dihydrouridine synthase family protein, putative, expressed
LOC_Os03g488901/11Leucine Rich Repeat family protein
LOC_Os09g150601/11hypothetical protein
LOC_Os01g351841/11CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os08g279501/11hypothetical protein
LOC_Os11g284601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006808biological_processregulation of nitrogen utilization
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009651biological_processresponse to salt stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005576cellular_componentextracellular region
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8934.1.S1_x_at--315--55121Chr11:17100920..17100939 (20 bp)
GAACAAAAATGCCACTACTATTCAT
NONE
OsAffx.8934.1.S1_x_at--928--9891Chr01:18975212..18975236 (25 bp)
TACTATTCATGATATTGCGGATGGT
NONE
OsAffx.8934.1.S1_x_at--1000--111Chr01:18975216..18975240 (25 bp)
ATTCATGATATTGCGGATGGTGTCA
NONE
OsAffx.8934.1.S1_x_at--534--8831Chr01:18975221..18975245 (25 bp)
TGATATTGCGGATGGTGTCAAGGAT
NONE
OsAffx.8934.1.S1_x_at--158--3811Chr01:18975273..18975297 (25 bp)
CTCCCATTGCGGATGCGATCGAGGA
NONE
OsAffx.8934.1.S1_x_at--545--5651Chr01:18975296..18975320 (25 bp)
GACAGAGACGGCGACAGTGGCTCCC
NONE
OsAffx.8934.1.S1_x_at--32--2151Chr01:18975297..18975321 (25 bp)
ACAGAGACGGCGACAGTGGCTCCCG
NONE
OsAffx.8934.1.S1_x_at--1033--4772Chr11:15878364..15878546 (25 bp)
GCTGCGGCTGCAGGGCCGACAATAG
LOC_Os11g28460
OsAffx.8934.1.S1_x_at--929--2231Chr01:18975534..18975558 (25 bp)
ACAATAGCGGTGACGGACTGACGGC
NONE
OsAffx.8934.1.S1_x_at--910--7371Chr01:18975543..18975567 (25 bp)
GTGACGGACTGACGGCAGTGGCTCC
NONE
OsAffx.8934.1.S1_x_at--165--1571Chr01:18975602..18975626 (25 bp)
AGCTACGGTGGTGGTCGACGACATT
NONE
Target Sequence 
GAACAAAAATGCCACTACTATTCATGATATTGCGGATGGTGTCAAGGATGGCGGCGGCGGCGGCGGCACCCGAGACCTCC
CATTGCGGATGCGATCGAGGACAGAGACGGCGACAGTGGCTCCCGAGCGCTCCCACGCGGATGGCGTCAAGGACAGCGGC
GGCTGCGGCTGCAGGGCCGACAATAGCGGTGACGGACTGACGGCAGTGGCTCCCGAGGCCTTCACGGAGGTGGTCGATGA
CGGCGGCAGCTACGGTGGTGGTCGACGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8934.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis