Browse Element(s) Details


OsAffx.9021.1.S1_x_at

Description gb:NM_193307.1
DB_XREF= gi:34913697
GEN=OSJNBa0062A24.20
TID=OsAffx.9021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0062A24.20 (OSJNBa0062A24.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g084401/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0009524cellular_componentphragmoplast
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9021.1.S1_x_at--514--2751NONE
AAGAACTTCCGCTCTGGAGGAGGAG
NONE
OsAffx.9021.1.S1_x_at--518--991Chr01:20351058..20351082 (25 bp)
AGGAGGTGGCGCTGGCATGCGGGCC
NONE
OsAffx.9021.1.S1_x_at--317--7551Chr01:20351038..20351062 (25 bp)
GGGCCCCACGCGGTAGAGGCTCAAG
NONE
OsAffx.9021.1.S1_x_at--68--3952Chr01:19777236..19777260 (25 bp)
CGGCTTCAAGCTGGCCGGCCGGTTA
NONE
OsAffx.9021.1.S1_x_at--1126--1852Chr01:20350685..20350706 (22 bp)
ACGACGACGAAGTGGCTCGACGCGC
NONE
OsAffx.9021.1.S1_x_at--1102--4791Chr01:20350619..20350692 (25 bp)
GCTCGACGCGCGTGGTGAGAGCGAC
NONE
OsAffx.9021.1.S1_x_at--646--4691Chr01:20350570..20350594 (25 bp)
GCGGCGGCCGGGATAGCTCCCGTGA
NONE
OsAffx.9021.1.S1_x_at--708--9311Chr01:20350553..20350577 (25 bp)
TCCCGTGACGGCGAAGCTAGCGCGG
NONE
OsAffx.9021.1.S1_x_at--409--1571Chr01:20350539..20350563 (25 bp)
AGCTAGCGCGGCGAATGCACGGCGT
NONE
OsAffx.9021.1.S1_x_at--690--3711Chr01:20350504..20350528 (25 bp)
CTAGCAGCGACTTCGTGCGGCCGGA
NONE
OsAffx.9021.1.S1_x_at--987--9411Chr01:20350492..20350516 (25 bp)
TCGTGCGGCCGGAGCTCGGTAGCGA
NONE
Target Sequence 
AAGAACTTCCGCTCTGGAGGAGGAGGTGGCGCTGGCATGCGGGCCCCACGCGGTAGAGGCTCAAGGGGAGGAGGAAGGCG
GCCTGGCTCGGCTCGGCTTCAAGCTGGCCGGCCGGTTATGGCGAGAGCGGTGGCGCGCGCGCGTCGCCGGCGACGACAAC
CGGCGGCTAGAGGCAGCGGCGGGCGACGACGGCGGACGGCGGCGGCAAGTGATGGACGGCGGGGCGCGCGGGATGGACGA
GACGGGCCTCGACCTCGCGAGGCCGACGACGACGACGAAGTGGCTCGACGCGCGTGGTGAGAGCGACGCCGCGGCGGCGC
ACGGCAAGCGAGCGGCGGCCGGGATAGCTCCCGTGACGGCGAAGCTAGCGCGGCGAATGCACGGCGTGGCGGCGGCCCTA
GCAGCGACTTCGTGCGGCCGGAGCTCGGTAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9021.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis