Browse Element(s) Details


OsAffx.9073.1.S1_x_at

Description gb:NM_193097.1
DB_XREF= gi:34913277
TID=OsAffx.9073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0519E12.17 (P0519E12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4385011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43790NANA7+26198027..26202728retrotransposon protein, putative, unclassified
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
LOC_Os07g43820Os.41106.1.S1_at11/117+26213400..26214563Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9073.1.S1_x_at--492--1431Chr07:26223406..26223430 (25 bp)
AGAACAACCGCCTCTGCTGCATCTG
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--870--1831Chr07:26223249..26223273 (25 bp)
ACGCGTGGGCGAGTACTGGTACCAC
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--851--1151Chr07:26223238..26223262 (25 bp)
AGTACTGGTACCACGCCGGCATGGA
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--45--2171Chr07:26223135..26223159 (25 bp)
ACAGCCCAGTGGAGATGCAAACGAG
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--504--6031Chr07:26223124..26223148 (25 bp)
GAGATGCAAACGAGAACCCTCCACC
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--907--7591Chr07:26223072..26223096 (25 bp)
GGGCAACTCCGATGGCCGACGAGCT
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--1094--7391Chr07:26223043..26223067 (25 bp)
GTGATCCTCCTGACCAACAATGTGA
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--718--7391Chr07:26223022..26223046 (25 bp)
GTGATGGCACAGTAAGTAATTTATT
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--320--9791Chr07:26222998..26223022 (25 bp)
TAACGGTACATCATTTCAACGAAAT
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--176--711Chr07:26222963..26222987 (25 bp)
ATGATAACGGAATACCACTCCAACA
LOC_Os07g43850
OsAffx.9073.1.S1_x_at--579--8211Chr07:26222955..26222979 (25 bp)
GGAATACCACTCCAACAAAATAATT
LOC_Os07g43850
Target Sequence 
AGAACAACCGCCTCTGCTGCATCTGCCGATCGCCGTGCCGCGTCGTCGTCGTCACCAACCCCGACGCCATCGCCGCCGCC
GGCGGCGGCGGCTGGCCCGCCGTCTCCTCGCGGCTACCGAGGTCGCGGACCGGTGGCGGGTACTCGCAGGTCGAGGGACG
CGTGGGCGAGTACTGGTACCACGCCGGCATGGAGGCCTTCTTCGACGACGAGCGCCAGTACGAGGCGGCGAAGGCGGCGG
CGCAGTTAGGGCCGCCGCCGCCGCCGCCGCCACAGCCCAGTGGAGATGCAAACGAGAACCCTCCACCGCCGCCGCCGCCA
CTTCGCACCGGTGTGGGCAACTCCGATGGCCGACGAGCTCGCCGTGATCCTCCTGACCAACAATGTGATGGCACAGTAAG
TAATTTATTAACGGTACATCATTTCAACGAAATAGTTGATATCATGATAACGGAATACCACTCCAACAAAATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9073.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis